View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7121_low_3 (Length: 405)

Name: NF7121_low_3
Description: NF7121
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7121_low_3
NF7121_low_3
[»] chr8 (18 HSPs)
chr8 (12-405)||(3391203-3391596)
chr8 (13-405)||(3364310-3364702)
chr8 (12-405)||(3314999-3315392)
chr8 (170-401)||(3407148-3407379)
chr8 (59-229)||(13787541-13787711)
chr8 (338-405)||(3286508-3286575)
chr8 (12-192)||(3429556-3429740)
chr8 (338-405)||(31175988-31176055)
chr8 (338-400)||(3262620-3262682)
chr8 (12-117)||(3262300-3262405)
chr8 (13-126)||(3407006-3407119)
chr8 (11-95)||(7164327-7164411)
chr8 (338-405)||(3324993-3325060)
chr8 (338-405)||(7164645-7164712)
chr8 (44-117)||(3286217-3286290)
chr8 (12-92)||(3324670-3324750)
chr8 (347-401)||(3398522-3398576)
chr8 (340-405)||(3267193-3267258)
[»] chr5 (6 HSPs)
chr5 (13-401)||(15803056-15803444)
chr5 (347-402)||(20812421-20812476)
chr5 (347-405)||(12599054-12599112)
chr5 (347-405)||(20838773-20838831)
chr5 (345-405)||(8877750-8877810)
chr5 (338-403)||(30417963-30418028)
[»] chr3 (8 HSPs)
chr3 (12-162)||(6905497-6905647)
chr3 (321-405)||(6905782-6905866)
chr3 (345-405)||(47986752-47986812)
chr3 (345-405)||(47996039-47996099)
chr3 (345-405)||(48005326-48005386)
chr3 (345-405)||(48014611-48014671)
chr3 (338-405)||(32411076-32411143)
chr3 (13-118)||(32410763-32410868)
[»] scaffold0468 (2 HSPs)
scaffold0468 (321-405)||(6122-6206)
scaffold0468 (12-112)||(5837-5937)
[»] chr2 (2 HSPs)
chr2 (12-225)||(14766611-14766824)
chr2 (316-405)||(14766918-14767007)
[»] chr6 (18 HSPs)
chr6 (345-405)||(5354494-5354554)
chr6 (345-405)||(5157508-5157568)
chr6 (345-400)||(5370717-5370772)
chr6 (345-404)||(5690039-5690098)
chr6 (345-405)||(5066574-5066634)
chr6 (345-405)||(5176880-5176940)
chr6 (345-405)||(5243793-5243853)
chr6 (345-405)||(5278707-5278767)
chr6 (345-405)||(5345002-5345062)
chr6 (345-405)||(5426051-5426111)
chr6 (345-404)||(5128297-5128356)
chr6 (345-405)||(5073788-5073848)
chr6 (345-405)||(5102494-5102554)
chr6 (345-404)||(5096850-5096909)
chr6 (353-404)||(5383468-5383519)
chr6 (348-398)||(31059813-31059863)
chr6 (344-405)||(5397091-5397152)
chr6 (345-405)||(5181807-5181867)
[»] chr7 (3 HSPs)
chr7 (345-405)||(36213709-36213769)
chr7 (12-163)||(8371314-8371465)
chr7 (307-405)||(8371621-8371719)
[»] chr4 (8 HSPs)
chr4 (345-405)||(4344787-4344847)
chr4 (348-405)||(4320502-4320559)
chr4 (345-405)||(4361218-4361278)
chr4 (349-401)||(6498410-6498462)
chr4 (349-403)||(6675846-6675900)
chr4 (349-403)||(6545332-6545386)
chr4 (353-403)||(6588084-6588134)
chr4 (345-405)||(4123819-4123879)
[»] scaffold0294 (1 HSPs)
scaffold0294 (345-404)||(8780-8839)


Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 405
Target Start/End: Original strand, 3391203 - 3391596
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgc 111  Q
    |||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  3391203 gaacctgtgataagctcttcccaagaatattgatgactatgtggcaatttcccattccaatcaaaagagatctcaaggaatgatccgaaatgtgtgatgc 3391302  T
Q  112 atgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaa 211  Q
    |||||| |||||||||||||||||||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||    
T  3391303 atgtgatattcccaattcagtaagaccggcatcatatagatcatcaagaaatcttctgaattcttgtttcagttgaatctctgagtcacattgtaccgaa 3391402  T
Q  212 acacttctaagttttgaacagctgctaagtatctgtgattgatagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgc 311  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  3391403 acacttctaagttttgaacagctgctaagtatttgtgattgatagactaaagccagattattgctctctatatccaaggaagcaagagactttgacatgc 3391502  T
Q  312 caccaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||| ||| | ||  |  |||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  3391503 caccaaaaggggaaatatgtgctacagaattcattgttggtgacatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcata 3391596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 3364702 - 3364310
Alignment:
Q  13 aacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgca 112  Q
    |||||||||||||||||| |  ||||| |||||||| |||| |||| |||| || |||| |||||| ||||||| || ||||| |||||| ||| |||||    
T  3364702 aacctgtgataagctcttgcgaagagtgttgatgacaatgtggcaacttccgataccaaacaaaagggatctcatggtaagattcgaaatttgtaatgca 3364603  T
Q  113 tgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaaa 212  Q
    |||||  ||| || |||||||||||||||| |||||||||||||||||||| ||| ||||||||| |||||||||||||| || ||||||||||||||||    
T  3364602 tgtgatgttctcatttcagtaagacctgcatcatatagatcatcaagaaatcttccgaattcttgcttcagttgaatctctgaatcacattgtaccgaaa 3364503  T
Q  213 cacttctaagttttgaacagctgctaagtatctgtgattgatagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgcc 312  Q
    ||||||||||| ||||||| ||| ||||||| ||||||||| |||| ||||||||||||||||| | |||||| ||||||  ||||||||||||||||||    
T  3364502 cacttctaagtcttgaacaactgttaagtatttgtgattgagagaccaaagccagattattgctatctatatccaaggaaaaaagagactttgacatgcc 3364403  T
Q  313 accaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||  ||| || ||||||||||||||||| |||||||||||||||||||| |||||||||| | ||||||||||||||||    
T  3364402 accaaaagggggaatgcgtggtaaggaattcattgttggtgatatccaagacctaatgagagaaggaaaaacatgatgtgataatccttcata 3364310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 405
Target Start/End: Complemental strand, 3315392 - 3314999
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgc 111  Q
    |||||| ||||||||||||||  ||||||||||||||||||| |||| |||| ||||||| |||||| |||||||||||||||||| |||| |||||| |    
T  3315392 gaacctctgataagctcttccgaagagtattgatgactatgtggcaacttccgattccaaacaaaagagatctcaaggaaagatccaaaatttgtgatcc 3315293  T
Q  112 atgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaa 211  Q
    ||||||  |||| |||||||||||||||||| |||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||    
T  3315292 atgtgatgttccaaattcagtaagacctgcatcatatatatcatcaagaaatcttctgaattcttgtttcagttgaatctctgagtcacattgtactgaa 3315193  T
Q  212 acacttctaagttttgaacagctgctaagtatctgtgattgatagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgc 311  Q
    |||||||||||||||||| |||||||||||||  ||||||||| ||| ||| ||| |||  | || | || ||| ||| || |||||||| |||||||||    
T  3315192 acacttctaagttttgaatagctgctaagtattggtgattgatggaccaaacccaaatttctactatctacatccaagcaaacaagagacattgacatgc 3315093  T
Q  312 caccaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||  |||||||| | ||  || ||||||||  |||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||    
T  3315092 caccaacggggggaatatgtgctaaggaattcatgtttggtgacatccaagaccaaatgatagaaggaaaaacatcacgtgataaaccttcata 3314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 170 - 401
Target Start/End: Original strand, 3407148 - 3407379
Alignment:
Q  170 aattcttgtttcagttgaatctccgagtcacattgtaccgaaacacttctaagttttgaacagctgctaagtatctgtgattgatagactaaagccagat 269  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||    
T  3407148 aattcttgtttaagttgaatctctgagtgacattgtaccgaaacacatctaagttttgaacagctgctaagtatcggtgattgatagaccaaacccagat 3407247  T
Q  270 tattgctctttatatctaaggaagcaagagactttgacatgccaccaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaat 369  Q
    |||  || |  ||||  |||||| |||||||| |||| || |||||||||| ||||||   ||  || || ||||||||||||||||||||||||| |||    
T  3407248 tatcactatcaatattcaaggaaacaagagacattgaaattccaccaaaagagggaatacgtgctaaggagttcattgttggtgacatccaagaccaaat 3407347  T
Q  370 gagagatggaaaaacatcacgtgataatcctt 401  Q
    || ||| |||||||||||||||||||||||||    
T  3407348 gatagaaggaaaaacatcacgtgataatcctt 3407379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 13787711 - 13787541
Alignment:
Q  59 tttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgcatgtgacattcccaattcagtaagacctgcaccatatagatcatcaa 158  Q
    ||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||  |||| | || ||| ||||||||||| |||||| | ||||    
T  13787711 tttcctattccaatcaaaagtgatctcaaggaaagatccgaaatttgtgatgcatgcgatgttccaattttagtgagacctgcaccgtatagaccttcaa 13787612  T
Q  159 gaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaaacacttctaagttttgaa 229  Q
    ||||| |||  ||| ||| |||||| |||||||| || |  || |||||||||||||||||| ||||||||    
T  13787611 gaaatcttcttaatacttctttcagatgaatctctgattggcaatgtaccgaaacacttctatgttttgaa 13787541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 3286508 - 3286575
Alignment:
Q  338 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  3286508 gaattcagtgttggtgacatccaagacctaatgagagattgaaaaacatcatgtgataatccttcata 3286575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 192
Target Start/End: Complemental strand, 3429740 - 3429556
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactat----gttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtg 107  Q
    ||||||||||||| ||||| || |||||||  ||||||||    || |||| ||||||||||||||| ||| ||||||||| |||||| ||| || | ||    
T  3429740 gaacctgtgataaactcttgccaagagtatcaatgactatatatgtggcaacttcccattccaatcataagagatctcaagaaaagattcgacatttctg 3429641  T
Q  108 atgcatgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaattttcggaattcttgtttcagttgaatctc 192  Q
    ||||||||||  |||| |||||| ||||| ||||| || ||||| ||  ||||||  |||  |||||||| || ||||| |||||    
T  3429640 atgcatgtgatgttccgaattcattaagatctgcatcacatagaccacgaagaaaccttcttaattcttgctttagttgcatctc 3429556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 338 - 405
Target Start/End: Complemental strand, 31176055 - 31175988
Alignment:
Q  338 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||| || ||||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||    
T  31176055 gaatttatggttggtgacatccaagaccaaatgagagaaggaaaaacgtcacatgataatccttcata 31175988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 3262620 - 3262682
Alignment:
Q  338 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcct 400  Q
    |||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||| ||||||    
T  3262620 gaattcatggttggtgacatccaagaccaaatgatagagggaaaaacatcacgtgaaaatcct 3262682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 3262300 - 3262405
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgc 111  Q
    |||||||||||| |||||| || ||||| |||||||||| || |||| |||| |||| |||||| ||||||||| |||||||||  || |  ||||||||    
T  3262300 gaacctgtgatatgctctttccaagagttttgatgactacgtggcaacttcctattctaatcaatagcgatctcgaggaaagatttgagacttgtgatgc 3262399  T
Q  112 atgtga 117  Q
    ||||||    
T  3262400 atgtga 3262405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 3407006 - 3407119
Alignment:
Q  13 aacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgca 112  Q
    |||||| ||||||||||| || ||||| | | ||||| ||| | || ||||||||||||||||||| |||  |||||||||||| || || ||||| |||    
T  3407006 aacctgcgataagctcttgccaagagtctcgttgactttgtggtaacttcccattccaatcaaaagagattgcaaggaaagatctgagatttgtgaagca 3407105  T
Q  113 tgtgacattcccaa 126  Q
    ||||| ||| ||||    
T  3407106 tgtgatatttccaa 3407119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 7164327 - 7164411
Alignment:
Q  11 agaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagat 95  Q
    |||||||| |||| |||||| ||  ||||||  |||| |||||  ||| ||||||||||||||||||| ||||||||||||||||    
T  7164327 agaacctgggatatgctcttgccacgagtatcaatgattatgtgacaacttcccattccaatcaaaagtgatctcaaggaaagat 7164411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 3324993 - 3325060
Alignment:
Q  338 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||  |||||||||||||||||| ||||| ||| |||||||||||  |||||| |||||||||    
T  3324993 gaattcatgcttggtgacatccaagaccaaatgatagaaggaaaaacatcgtgtgatagtccttcata 3325060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 7164645 - 7164712
Alignment:
Q  338 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||  ||||||||||||||||||| ||| ||||| |||||||||||||  ||||| ||||||||    
T  7164645 gaattcaaggttggtgacatccaagaccaaataagagaaggaaaaacatcacaggataacccttcata 7164712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 3286217 - 3286290
Alignment:
Q  44 atgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgcatgtga 117  Q
    |||| ||||| | |||||||||||||||||||||| |||||||| ||| |||  || || ||||||||||||||    
T  3286217 atgaatatgtggaaatttcccattccaatcaaaagtgatctcaaagaaggatttgagatttgtgatgcatgtga 3286290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 92
Target Start/End: Original strand, 3324670 - 3324750
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaa 92  Q
    |||||||||||| | |||| || ||||| |||||| | ||| ||||| |||| | ||||||||||||||||||| ||||||    
T  3324670 gaacctgtgatatgttcttgccaagagtgttgatggccatgctgcaacttcctaatccaatcaaaagcgatctccaggaaa 3324750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 401
Target Start/End: Original strand, 3398522 - 3398576
Alignment:
Q  347 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcctt 401  Q
    |||||||||||||| |||| ||||||||| ||||||||||||   ||||||||||    
T  3398522 gttggtgacatccatgaccaaatgagagaaggaaaaacatcagacgataatcctt 3398576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 3267193 - 3267258
Alignment:
Q  340 attcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||||||||||||||||  ||| | |||  ||||||||||   |||||||||||||||    
T  3267193 attcattgttggtgacatccaagactgaataatagaatgaaaaacatcttctgataatccttcata 3267258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 15803444 - 15803056
Alignment:
Q  13 aacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgca 112  Q
    |||| ||||||||||||| || |||||||||||||| ||||  ||| |||| || |||| |||||| ||||||| | ||||||||||||| ||| ||||     
T  15803444 aacccgtgataagctcttgccaagagtattgatgacaatgtgacaacttccgataccaaacaaaagggatctcatgaaaagatccgaaatttgtaatgcc 15803345  T
Q  113 tgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaaa 212  Q
    |||||  |||||| |||||||||||||||| ||||||||| |||||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||||    
T  15803344 tgtgatgttcccacttcagtaagacctgcatcatatagattatcaagaaatcttctgaattcttgtttcagttgaatctctgagtcacattgtactgaaa 15803245  T
Q  213 cacttctaagttttgaacagctgctaagtatctgtgattgatagactaaagccagattattgctctttatatctaaggaagcaagagactttgacatgcc 312  Q
    ||||||||||| ||||||| ||| ||||||| ||||||||| | || ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  15803244 cacttctaagtcttgaacaactgttaagtatttgtgattgagacaccaaatccagattattgctctctatatccaaggaagcaagagactttgacatgcc 15803145  T
Q  313 accaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcctt 401  Q
    |||||||||||||||| |||| || |||||||||| |||||| |||||||||||||||||||| |||||||||||| ||||||||||||    
T  15803144 accaaaagggggaatgcatggtaaggaattcattgctggtgatatccaagacctaatgagagaaggaaaaacatcatgtgataatcctt 15803056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 347 - 402
Target Start/End: Complemental strand, 20812476 - 20812421
Alignment:
Q  347 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttc 402  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  20812476 gttggtgacatccaagaccaaatgagagaaggaaaaacatcacgtgataatccttc 20812421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 12599054 - 12599112
Alignment:
Q  347 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||    
T  12599054 gttggtgacatccaagaccaattgagagaaggaaaaacatcacgtgataatccttcata 12599112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 20838831 - 20838773
Alignment:
Q  347 gttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  20838831 gttggtgacatccaagaccaaatgagagaaggaaaaacatcatgtgataatccttcata 20838773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 8877810 - 8877750
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||| || |||||||||||    
T  8877810 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgcgaaaatccttcata 8877750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 338 - 403
Target Start/End: Complemental strand, 30418028 - 30417963
Alignment:
Q  338 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 403  Q
    ||||| ||||||||||||||||||||||  |||||| | ||||||||||||||||  |||||||||    
T  30418028 gaatttattgttggtgacatccaagaccgtatgagacaaggaaaaacatcacgtgcaaatccttca 30417963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 6905497 - 6905647
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgc 111  Q
    ||||||||||||||||||| || ||||||| || |||||||| |||| ||||||||  ||||||||| ||| ||||||||| |||||| || | ||||||    
T  6905497 gaacctgtgataagctcttgccaagagtatcgacgactatgtggcaacttcccattgtaatcaaaagagatttcaaggaaatatccgagatttttgatgc 6905596  T
Q  112 atgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaa 162  Q
    ||||||  || || |||||||||||  ||||||||||||| ||||||||||    
T  6905597 atgtgatgtttccgattcagtaagatttgcaccatatagaccatcaagaaa 6905647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 6905782 - 6905866
Alignment:
Q  321 ggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||| ||||| || | |||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  6905782 ggggaatatatggcaagggattcattgttggtgacatccaagaccaaatgagagaaggaaaaatatcacgtgataatccttcata 6905866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 47986752 - 47986812
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  47986752 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47986812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 47996039 - 47996099
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  47996039 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 47996099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 48005326 - 48005386
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  48005326 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48005386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 48014611 - 48014671
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  48014611 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgaaaatccttcata 48014671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 338 - 405
Target Start/End: Original strand, 32411076 - 32411143
Alignment:
Q  338 gaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||| || ||| ||||||||||||||||    
T  32411076 gaattcattgttggtgacatctaagaccaaatgagagagggaaatacttcatgtgataatccttcata 32411143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 118
Target Start/End: Original strand, 32410763 - 32410868
Alignment:
Q  13 aacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgca 112  Q
    ||||||||||| |||||| || |||||||  || ||||||| |||| ||||||||| |||||||||||| ||||| ||| |||  || |  |||||||||    
T  32410763 aacctgtgatatgctcttgccaagagtatcaataactatgtggcaacttcccattctaatcaaaagcgacctcaaagaatgatttgagaattgtgatgca 32410862  T
Q  113 tgtgac 118  Q
    ||||||    
T  32410863 tgtgac 32410868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 405
Target Start/End: Original strand, 6122 - 6206
Alignment:
Q  321 ggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||    
T  6122 ggggaatatgtggcaatgaattcattgttggtgacatccaagaccaaataagggaaggaaaaacatcacgtgataatccttcata 6206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 5837 - 5937
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgc 111  Q
    |||||||||||||||| || || |||| |||||  ||||||| |||| ||||||||  ||||||||| ||| |||||||||||||||| || ||||||||    
T  5837 gaacctgtgataagctattgccaagagcattgacaactatgtggcaacttcccattgtaatcaaaagagatttcaaggaaagatccgagatttgtgatgc 5936  T
Q  112 a 112  Q
    |    
T  5937 a 5937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 14766611 - 14766824
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgc 111  Q
    |||||||||||||||| || || |||||||| || ||| ||| | || ||||||||||||||||||| || ||||| |||||| | || || |||||||     
T  14766611 gaacctgtgataagcttttgccaagagtatttataactgtgtcgtaacttcccattccaatcaaaagtgacctcaacgaaagaacagagatttgtgatgt 14766710  T
Q  112 atgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaattttcggaattcttgtttcagttgaatctccgagtcacattgtaccgaa 211  Q
    ||||||  || ||| |||||||| |  |||| ||| ||||||||||| |||| ||   |||||  |  | |||||||||| |||||  |||||||||  |    
T  14766711 atgtgatgtttccagttcagtaaaatttgcatcatgtagatcatcaataaatcttgttaattcccgggttagttgaatcttcgagtggcattgtacctga 14766810  T
Q  212 acacttctaagttt 225  Q
    | ||||||||||||    
T  14766811 aaacttctaagttt 14766824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 405
Target Start/End: Original strand, 14766918 - 14767007
Alignment:
Q  316 aaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||||  ||| || ||| ||||||| || ||||||||| ||| |||||| |||||||||| |||| | ||||||||||||||    
T  14766918 aaaagggggaatgcgtggtaaggaagtcattgtaggagacatccaaaaccgaatgagtgatggaaaaatatcatgcgataatccttcata 14767007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 5354494 - 5354554
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||    
T  5354494 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgtgagaatccttcata 5354554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 5157508 - 5157568
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||| || |||||||||||    
T  5157508 ttgttggtgacatccaagaccaaatgatagatggaaacacatcacgagaaaatccttcata 5157568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 5370772 - 5370717
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcct 400  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||||    
T  5370772 ttgttggtgacatccaagaccaaatgatagatggaaaaacatcatgtgaaaatcct 5370717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 5690039 - 5690098
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 404  Q
    ||||||||||||||||||||| ||||| ||||||||| | ||||||||| ||||||||||    
T  5690039 ttgttggtgacatccaagaccaaatgatagatggaaatatatcacgtgagaatccttcat 5690098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 5066574 - 5066634
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||  ||||| ||||||||| |||||||| || |||||||||||    
T  5066574 ttgttggtgacatccaagacaaaatgatagatggaaacacatcacgcgagaatccttcata 5066634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 5176940 - 5176880
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| |||||  |||||||| | ||||||||| |||||||||||    
T  5176940 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcata 5176880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 5243793 - 5243853
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||||||||||||  |||| ||||||||| ||||| ||||| |||||||||||    
T  5243793 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgaaaatccttcata 5243853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 5278767 - 5278707
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| |||||  |||||||| | ||||||||| |||||||||||    
T  5278767 ttgttggtgacatccaagaccaaatgattgatggaaatatatcacgtgagaatccttcata 5278707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 5345062 - 5345002
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||||||||||||  |||| ||||||||| ||||| ||||| |||||||||||    
T  5345062 ttgttggtgacatccaagaccagatgatagatggaaatacatcgcgtgagaatccttcata 5345002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 5426111 - 5426051
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| |||||  | |||||| ||||||||||| |||||||||||    
T  5426111 ttgttggtgacatccaagaccaaatgatcgctggaaacacatcacgtgaaaatccttcata 5426051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 5128297 - 5128356
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 404  Q
    |||||||||||||||||||||  |||| ||||||||| ||||||| ||| ||||||||||    
T  5128297 ttgttggtgacatccaagaccagatgatagatggaaacacatcacttgaaaatccttcat 5128356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 5073788 - 5073848
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||| |||||||||||||||| |||||  ||||| || ||||||||||| |||||||||||    
T  5073788 ttgtcggtgacatccaagaccaaatgatcgatgggaacacatcacgtgagaatccttcata 5073848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 5102494 - 5102554
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||||||||||||  |||| ||||||||| |||||| |||| | |||||||||    
T  5102494 ttgttggtgacatccaagaccagatgatagatggaaacacatcatgtgaaagtccttcata 5102554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 404
Target Start/End: Complemental strand, 5096909 - 5096850
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 404  Q
    |||||||||||| ||||||||  |||| ||| ||||| ||||||||||| ||||||||||    
T  5096909 ttgttggtgacaaccaagaccagatgatagacggaaacacatcacgtgaaaatccttcat 5096850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 404
Target Start/End: Complemental strand, 5383519 - 5383468
Alignment:
Q  353 gacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 404  Q
    |||||||||||| ||||||  |||||||| ||||||||||| ||||||||||    
T  5383519 gacatccaagacttaatgatggatggaaacacatcacgtgagaatccttcat 5383468  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 398
Target Start/End: Original strand, 31059813 - 31059863
Alignment:
Q  348 ttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatc 398  Q
    ||||||||||| |||||| ||||||||| ||||||||||||| ||| ||||    
T  31059813 ttggtgacatcaaagaccaaatgagagaaggaaaaacatcacatgacaatc 31059863  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 405
Target Start/End: Complemental strand, 5397152 - 5397091
Alignment:
Q  344 attgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||||||||||||  ||||| || |||||| || |||| ||| |||||||||||    
T  5397152 attgttggtgacatccaagacgaaatgatagctggaaacacttcacatgaaaatccttcata 5397091  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 5181807 - 5181867
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||| |||||||||||||||| |||||  | |||||| |||||| |||| |||||||||||    
T  5181807 ttgtcggtgacatccaagaccaaatgatcgctggaaacacatcatgtgagaatccttcata 5181867  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 36213709 - 36213769
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||| |||| |||||||||||    
T  36213709 ttgttggtgacatccaagaccaaatgatagatggaaacacatcatgtgagaatccttcata 36213769  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 8371314 - 8371465
Alignment:
Q  12 gaacctgtgataagctcttccccagagtattgatgactatgttgcaatttcccattccaatcaaaagcgatctcaaggaaagatccgaaatgtgtgatgc 111  Q
    ||||||||||||  ||||| || |||||||| |||||| |||   || | ||||||||||||||||| ||||| || |||||| | || || |||||||     
T  8371314 gaacctgtgatatactcttgccaagagtatttatgactgtgtgataactacccattccaatcaaaagtgatcttaatgaaagaacagagatttgtgatgt 8371413  T
Q  112 atgtgacattcccaattcagtaagacctgcaccatatagatcatcaagaaat 163  Q
     |||||  || ||| |||||||| |  |||| ||||||||||||||||||||    
T  8371414 gtgtgatgtttccagttcagtaaaatttgcatcatatagatcatcaagaaat 8371465  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 405
Target Start/End: Original strand, 8371621 - 8371719
Alignment:
Q  307 catgccaccaaaagggggaatgtatggaaatgaattcattgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||| ||||||||||||||   ||| || ||||| || || || ||||||||| ||| |||||| || |||||||| ||| ||||||||||||||||    
T  8371621 catgcctccaaaagggggaatacgtggtaacgaatttatagtaggagacatccaaaaccgaatgagtgaaggaaaaacttcatgtgataatccttcata 8371719  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 4344847 - 4344787
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||    
T  4344847 ttgttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcata 4344787  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 348 - 405
Target Start/End: Original strand, 4320502 - 4320559
Alignment:
Q  348 ttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||||||    
T  4320502 ttggtgacatccaagaccaaatgatagaaggaaacacatcacgtgagaatccttcata 4320559  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 405
Target Start/End: Complemental strand, 4361278 - 4361218
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    ||||||||||||||||||||  ||||| ||| ||||| ||||||||||| |||||||||||    
T  4361278 ttgttggtgacatccaagacgaaatgatagaaggaaacacatcacgtgagaatccttcata 4361218  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 349 - 401
Target Start/End: Original strand, 6498410 - 6498462
Alignment:
Q  349 tggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatcctt 401  Q
    ||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||    
T  6498410 tggtgacatccaagaccgaatgagagaaggaaatacatcacgtgaaaatcctt 6498462  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 349 - 403
Target Start/End: Complemental strand, 6675900 - 6675846
Alignment:
Q  349 tggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 403  Q
    |||||||||||||||| |||||||||| ||||| |||||| |||| |||||||||    
T  6675900 tggtgacatccaagacttaatgagagaaggaaatacatcaagtgaaaatccttca 6675846  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 6545332 - 6545386
Alignment:
Q  349 tggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 403  Q
    |||||||| |||||||| ||||||||| || || ||||||||||| |||||||||    
T  6545332 tggtgacagccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca 6545386  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 6588084 - 6588134
Alignment:
Q  353 gacatccaagacctaatgagagatggaaaaacatcacgtgataatccttca 403  Q
    ||||||||||||| ||||||||| || || ||||||||||| |||||||||    
T  6588084 gacatccaagaccgaatgagagaagggaatacatcacgtgaaaatccttca 6588134  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 405
Target Start/End: Original strand, 4123819 - 4123879
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcata 405  Q
    |||||||| |||||||||||  ||||| ||| ||||| |||||||| || |||||||||||    
T  4123819 ttgttggtaacatccaagacgaaatgatagaaggaaacacatcacgagagaatccttcata 4123879  T

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Target: scaffold0294 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 8780 - 8839
Alignment:
Q  345 ttgttggtgacatccaagacctaatgagagatggaaaaacatcacgtgataatccttcat 404  Q
    ||||||| |||||||||||| |||||| ||||||||| ||||||||||| ||||||||||    
T  8780 ttgttggagacatccaagacttaatgatagatggaaacacatcacgtgagaatccttcat 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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