View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7122_high_10 (Length: 238)

Name: NF7122_high_10
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7122_high_10
NF7122_high_10
[»] chr4 (4 HSPs)
chr4 (1-218)||(23062270-23062487)
chr4 (1-207)||(32880670-32880863)
chr4 (64-149)||(43992238-43992323)
chr4 (67-161)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (1-218)||(28592877-28593093)
[»] chr6 (2 HSPs)
chr6 (1-218)||(25907272-25907489)
chr6 (40-143)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (1-218)||(21279272-21279489)
chr8 (36-145)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (1-77)||(30302015-30302090)
chr5 (61-107)||(14779531-14779577)
chr5 (67-143)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (11-161)||(9817132-9817282)
chr7 (11-161)||(10719057-10719207)
chr7 (34-80)||(20483935-20483981)
chr7 (61-149)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (11-161)||(15229641-15229790)
chr1 (29-158)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (43-145)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (36-145)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (37-143)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 23062270 - 23062487
Alignment:
1 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062270 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgat 23062369  T
101 accagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062370 accagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 23062469  T
201 agcccctttactccgaca 218  Q
    |||||||| |||| ||||    
23062470 agccccttgactctgaca 23062487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 32880863 - 32880670
Alignment:
1 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgat 100  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||    
32880863 cgtaccccttcattattatccaaaacattaatgcggtttaccttctttcttgacgtggttgaagcatgaaaatatttggtattcaagtcaccatcatgat 32880764  T
101 accagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 200  Q
    |||||||||||||||||||||||| || |||||||||||||||||||||||||             ||||||||||||||||||||||||||| ||||||    
32880763 accagtgtgtctttgctcgctgtcacccatacttatcctcttgaatcatcaaa-------------tgcgcaagtttgtcaacaaactaggataagccgc 32880677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 43992238 - 43992323
Alignment:
64 gcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 149  Q
    ||||||||||| || ||||| || ||||||||||||||||| || || |||||||  |||| ||||||||||||||||||||||||    
43992238 gcatgaaaaaaatttgtatttaaatcaccatcacgataccaatgagtttttgctctttgtctccaatacttatcctcttgaatcat 43992323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 161
Target Start/End: Original strand, 19318834 - 19318928
Alignment:
67 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 161  Q
    ||||||||||| || || |  ||||||||||| ||||||||  | ||||| || ||||||||||| ||||||||||| |||||||| || |||||    
19318834 tgaaaaaatttcgtgtttagatcaccatcacggtaccagtgaatttttgcacgttgtcgccaatatttatcctcttgtatcatcaactgagtcat 19318928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28592877 - 28593093
Alignment:
1 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgat 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
28592877 cgtaccccttcatcattatccaaaaaattaatgcggtttatcttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgat 28592976  T
101 accagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
28592977 accagtgtgtctttgctcgttgtcgccaatacttatcctcttgaat-atcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 28593075  T
201 agcccctttactccgaca 218  Q
    |||||||| |||||||||    
28593076 agccccttgactccgaca 28593093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 25907272 - 25907489
Alignment:
1 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
25907272 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacatggctgaagcatgaagaaatttggtattcaagtcaccatcacgat 25907371  T
101 accagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 200  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25907372 acaagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 25907471  T
201 agcccctttactccgaca 218  Q
    | |||||  |||||||||    
25907472 aacccctcgactccgaca 25907489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 21695952 - 21695849
Alignment:
40 accttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcct 139  Q
    |||||||||||||| || ||||  |||||||| ||| | |||||||| || ||||||||||||||||| || || ||||  |||| ||| ||| ||||||    
21695952 accttctttcttgaagttgctgccgcatgaaagaatctcgtattcaaatctccatcacgataccagtgagttttggctctttgtcaccagtacatatcct 21695853  T
140 cttg 143  Q
    ||||    
21695852 cttg 21695849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 21279272 - 21279489
Alignment:
1 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgat 100  Q
    ||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |||||||| ||||||||   ||| ||||||| ||||||||||||||    
21279272 cgtacccgttcatcattatccagaaaattaatgtggtttaccttctttcttgatgtggctgatgcatgaaatttttttgtattcacgtcaccatcacgat 21279371  T
101 accagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcatgcgtttgcgcaagtttgtcaacaaactaggatcagccgc 200  Q
    |||| |||||||| ||||| || |||||||| ||||| |||||||||||||| || ||||||||||| |||||||||||||| |||||||||||| ||||    
21279372 accaatgtgtcttagctcgttgccgccaatagttatcttcttgaatcatcaattgcgtcatgcgtttccgcaagtttgtcaaaaaactaggatcaaccgc 21279471  T
201 agcccctttactccgaca 218  Q
    |||||||| |||||||||    
21279472 agccccttgactccgaca 21279489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 28164880 - 28164989
Alignment:
36 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 135  Q
    |||||| |||||||| || || || |||||||| || | |||||| || | ||| |||||||||||||||||||| || |||| ||||| ||||||| ||    
28164880 gtttactttctttctggaggttgcggaagcatggaagattttggtgtttaggtctccatcacgataccagtgtgttttagctctctgtctccaatacata 28164979  T
136 tcctcttgaa 145  Q
    ||||||||||    
28164980 tcctcttgaa 28164989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30302090 - 30302015
Alignment:
1 cgtaccccttcatcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaattt 77  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
30302090 cgtaccccttcatcattatccaaaaaattaatgcggtttacc-tctttcttgacgtggctgaagcatgaaaaaattt 30302015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 14779577 - 14779531
Alignment:
61 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtg 107  Q
    ||||||| |||||| ||||| |||||||| |||||||||||||||||    
14779577 gaagcataaaaaaaattggtgttcaagtccccatcacgataccagtg 14779531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 20584800 - 20584724
Alignment:
67 tgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttg 143  Q
    ||||| ||||| || |||||||  ||||| ||||||||||| || || ||||  |||||||||||| ||||||||||    
20584800 tgaaagaatttcgtgttcaagtatccatcgcgataccagtgagttttggctctttgtcgccaatacatatcctcttg 20584724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 9817132 - 9817282
Alignment:
11 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 110  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| || || | ||||||||||||||||||||| ||    
9817132 catcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagtgttaaggtcaccatcacgataccagtgagt 9817231  T
111 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 161  Q
    ||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
9817232 cttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 9817282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 10719057 - 10719207
Alignment:
11 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 110  Q
    ||||||| |||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||  ||| || || | ||||||||||||||||||||| ||    
10719057 catcattttccaaaaaattaatacggtttaccttttttctagacgtggctgcagcatgaaaatttttagtgttaaggtcaccatcacgataccagtgagt 10719156  T
111 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 161  Q
    ||| ||||| || |  |||||||| |||| || ||||||||| ||||||||    
10719157 cttagctcgatgccatcaatacttgtcctatttaatcatcaagtgtgtcat 10719207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 20483981 - 20483935
Alignment:
34 cggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggt 80  Q
    ||||||||||| |||||  ||||||| ||||||||||||||||||||    
20483981 cggtttaccttttttctaaacgtggcagaagcatgaaaaaatttggt 20483935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 149
Target Start/End: Complemental strand, 21115520 - 21115432
Alignment:
61 gaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctcttgaatcat 149  Q
    |||||||||||||| || || || |  ||||||||||||||||| || || || || ||||| |||||||| ||||| ||||| |||||    
21115520 gaagcatgaaaaaacttcgtgtttagatcaccatcacgataccaatgagttttcgcacgctgacgccaatatttatcttcttgtatcat 21115432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 161
Target Start/End: Complemental strand, 15229790 - 15229641
Alignment:
11 catcattatccaaaaaattaatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgt 110  Q
    ||||||| |||||||||||||| ||||||||||| ||||  || ||||||||||||| ||    ||| ||||| | |||||||| ||| ||||| || ||    
15229790 catcattttccaaaaaattaatacggtttaccttttttcaagatgtggctgaagcatcaatttttttagtattaaggtcaccat-acggtaccaatgagt 15229692  T
111 ctttgctcgctgtcgccaatacttatcctcttgaatcatcaaatgtgtcat 161  Q
    ||| || ||||| ||||||||||||||||||||||| ||||| || |||||    
15229691 cttagcacgctgccgccaatacttatcctcttgaataatcaagtgcgtcat 15229641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 10505307 - 10505436
Alignment:
29 taatgcggtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgcca 128  Q
    ||||| |||||||||||||| | || ||||  || |||||||||||||| |||||||  || ||| |||||||||| ||  |||| ||||| || | |||    
10505307 taatgtggtttaccttctttttagatgtggtagaggcatgaaaaaatttagtattcatatcgccaacacgataccaatggatcttggctcgttgcctcca 10505406  T
129 atacttatcctcttgaatcatcaaatgtgt 158  Q
    ||| ||||| ||||||||||||| ||||||    
10505407 atatttatcttcttgaatcatcagatgtgt 10505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 438 - 540
Alignment:
43 ttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttatcctctt 142  Q
    |||||||| || || || ||||||||||| ||||||||||| | ||| |||||||| |||||||||||||| |||| ||| | ||||||| | || ||||    
438 ttctttctggaggttgcggaagcatgaaagaatttggtattaaggtctccatcacggtaccagtgtgtcttagctctctgcctccaatacatgtcttctt 537  T
143 gaa 145  Q
    |||    
538 gaa 540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 26706 - 26815
Alignment:
36 gtttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatactta 135  Q
    |||||| |||||||  || || || ||||| || || ||||||||||| | ||| |||||||||||||||||||| || |||| ||| | ||||||| ||    
26706 gtttactttctttcaggaggttgcggaagcgtggaagaatttggtatttaggtctccatcacgataccagtgtgttttagctctctgcctccaatacata 26805  T
136 tcctcttgaa 145  Q
    || |||||||    
26806 tcttcttgaa 26815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 34932284 - 34932178
Alignment:
37 tttaccttctttcttgacgtggctgaagcatgaaaaaatttggtattcaagtcaccatcacgataccagtgtgtctttgctcgctgtcgccaatacttat 136  Q
    ||||| |||||||| || || || || ||||| || ||||| || |||| ||| |||||||||||| |||| || || |||| ||||| ||||||| |||    
34932284 tttactttctttctggaggttgcggacgcatggaagaattttgtgttcaggtctccatcacgatacaagtgcgttttagctctctgtctccaatacatat 34932185  T
137 cctcttg 143  Q
    |||||||    
34932184 cctcttg 34932178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University