View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7122_low_1 (Length: 746)
Name: NF7122_low_1
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 13 - 615
Target Start/End: Complemental strand, 17278606 - 17277986
Alignment:
| Q |
13 |
atcataatatttggcaatttccaagcaatataggaccgtatgttgagttactagggaaagtattctatgatggtcggttaaagggaagaaagaagatctc |
112 |
Q |
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| T |
17278606 |
atcataatatttggcaatttccaagcaatataggaccgtatgttgagttactagggaaagtattctatgatggtcggttaaagggaagaaagaagatctc |
17278507 |
T |
|
| Q |
113 |
caattatttatgggtccttgattcattaaaaccatcccttccaaataatccaatgcactatttttgtttcctttcattgagattaaccgttcttggtctt |
212 |
Q |
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| T |
17278506 |
caattatttatgggtccttgattcattaaaaccatcccttccaaataatccaatgcactatttttgtttcctttcattgagattaaccgttcttggtctt |
17278407 |
T |
|
| Q |
213 |
tggtaaaaacagaaaaatcactgtacaaaagtcttacccatttaacctgccaataaaatgaaattcaccattagttgatatacattgcaatttagaagtt |
312 |
Q |
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| T |
17278406 |
tggtaaaaacagaaaaatcactgtacaaaagtcttacccatttaacctgccaataaaatgaaattcaccattagttgatatacattgcaatgtaaaaatt |
17278307 |
T |
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| Q |
313 |
gtttatgcaatgtttcaaatccatgttattatattgataaagttaaatgcttgaaaattaaatgtttactagtgtcaatatactttgtgatcactacatt |
412 |
Q |
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| T |
17278306 |
gtttatgcaatgtttcaaat-catgttattatattgataaagttaaatgcttgaaaattaaatgtttactggtgtcaatatactttgtgatcactacatt |
17278208 |
T |
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| Q |
413 |
a-------------------atcaagatcaaatga-tttagaatatctacttaaaatttgttttgacaaagttaaaatgtacactatggtcgttattata |
492 |
Q |
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| T |
17278207 |
aagtttatttcaactattggatcaagatcaaatgattttggaatatctacttaaaatttgttttgacaaagttaaaatgtacactctcgtcgttattata |
17278108 |
T |
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| Q |
493 |
aacaaaaatttannnnnnnggttcaatgaataattaatgtatatggtcaatgttataaactagattcatccgttattcaatgaatccaacaattgagttt |
592 |
Q |
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| | |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |
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| T |
17278107 |
agc-aaaatttaattttttggttcaataaataattaatgtatatggtcaatgttataaaccagattcatctattattcaatgaatccaacaattgaattt |
17278009 |
T |
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| Q |
593 |
ttgcatataatagtgatcgtaga |
615 |
Q |
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| T |
17278008 |
ttgcatataatagtgatcgtaga |
17277986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 619 - 715
Target Start/End: Complemental strand, 17277931 - 17277835
Alignment:
| Q |
619 |
taagagtttgaacattaattcaacctttaaaatatctcactactatatataaggatgaggataggtcaaaccaactgatataaggatatgatgtaga |
715 |
Q |
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| T |
17277931 |
taagagtttgaacattaattcaacctttgaaatatctgactattatacataaggatgatgatagatcaaaccaaccgatctaaggatatgatgtaga |
17277835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 667 - 715
Target Start/End: Complemental strand, 17277981 - 17277933
Alignment:
| Q |
667 |
ataaggatgaggataggtcaaaccaactgatataaggatatgatgtaga |
715 |
Q |
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| T |
17277981 |
ataaggatgatgatagatcaaaccaaccgatctaaggatatgatgtaga |
17277933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 529 - 620
Target Start/End: Complemental strand, 20556011 - 20555920
Alignment:
| Q |
529 |
atgtatatggtcaatgttataaactagattcatccgttattcaatgaatccaacaattgagtttttgcatataatagtgatcgtagagtgta |
620 |
Q |
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| T |
20556011 |
atgtatatagtcaatattataaacaagattcattggttattcaatgaaacaaacaattgggtttttacttataatagtgatcggagggtgta |
20555920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 52445520 - 52445471
Alignment:
| Q |
188 |
attgagattaaccgttcttggtctttggtaaaaacagaaaaatcactgta |
237 |
Q |
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| T |
52445520 |
attgagattaaccgttcctgatctttggtaaaagcagaaaagtcactgta |
52445471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 556 - 604
Target Start/End: Complemental strand, 27457373 - 27457325
Alignment:
| Q |
556 |
attcatccgttattcaatgaatccaacaattgagtttttgcatataata |
604 |
Q |
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| T |
27457373 |
attcatcagttattcaatgaaactaacaattgagtttttgcttataata |
27457325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 603
Target Start/End: Complemental strand, 32886524 - 32886449
Alignment:
| Q |
528 |
aatgtatatggtcaatgttataaactagattcatccgttattcaatgaatccaacaattgagtttttgcatataat |
603 |
Q |
| |
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| T |
32886524 |
aatgtatatggttaatattataaatcagatttatcggttatttaataaacccaacaattgagttttttcttataat |
32886449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 514 - 577
Target Start/End: Original strand, 892590 - 892653
Alignment:
| Q |
514 |
ttcaatgaataattaatgtatatggtcaatgttataaactagattcatccgttattcaatgaat |
577 |
Q |
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| T |
892590 |
ttcattgaataattaatgtatttgttctatactatatactagatacatccgttattcaatgaat |
892653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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