View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7122_low_11 (Length: 267)
Name: NF7122_low_11
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_11 |
 | |
|
| [»] scaffold0661 (1 HSPs) |
| | |
|
| [»] scaffold0084 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0126 (1 HSPs) |
| | |
|
| [»] scaffold0218 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 16847806 - 16848069
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16847806 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
16847905 |
T |
|
| Q |
101 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16847906 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccaattaaag |
16848005 |
T |
|
| Q |
201 |
tgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
16848006 |
tgaacgggaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
16848069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 20965611 - 20965364
Alignment:
| Q |
17 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
116 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||| ||| | ||||| ||||| |||||||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
20965611 |
ctttcccaagcatcataaagtgactcaccttccccttgcctaaagttggctatctcttgtttcttatccaggtatttggacatagggaaaaacttctcta |
20965512 |
T |
|
| Q |
117 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
216 |
Q |
| |
|
|||||| ||||| | || |||||| |||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |
|
|
| T |
20965511 |
aaaacttcagctccagctcatcccatttttggatggtcccattaggcaaagtcaataaccagtctttagctttaccggttaaagtgaacgggaatagtct |
20965412 |
T |
|
| Q |
217 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|||||||||||| |||| | |||||||| ||||||||||| |||||| |
|
|
| T |
20965411 |
gagtttcttttgatcttcagtaacatttgctggaggaacacaaaactc |
20965364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 24436202 - 24435939
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436202 |
cagaagcaaattgaatctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
24436103 |
T |
|
| Q |
101 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
24436102 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgattaatg |
24436003 |
T |
|
| Q |
201 |
tgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
24436002 |
tgaacgggaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
24435939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 24902516 - 24902620
Alignment:
| Q |
7 |
caaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaa |
106 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24902516 |
caaattgaatctttcgcaagcatcataaagtgattcaccttcaccttgctaaaagcttgctatttcttgcttcttatccaagtacttggacatagggaaa |
24902615 |
T |
|
| Q |
107 |
tactt |
111 |
Q |
| |
|
||||| |
|
|
| T |
24902616 |
tactt |
24902620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 24902618 - 24902696
Alignment:
| Q |
186 |
ctttaccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
24902618 |
ctttaccggttaaagtgaacgggaatagcctgagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
24902696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 5895910 - 5896173
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5895910 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
5896009 |
T |
|
| Q |
101 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaag |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5896010 |
gggaaatacttctctataaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccaattaaag |
5896109 |
T |
|
| Q |
201 |
tgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
5896110 |
tgaacgggaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
5896173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 16322526 - 16322789
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16322526 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
16322625 |
T |
|
| Q |
101 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16322626 |
gggaaatacttctctagaaacttaagctttaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgattaaag |
16322725 |
T |
|
| Q |
201 |
tgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
16322726 |
tgaacgggaatagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
16322789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 18504501 - 18504764
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18504501 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
18504600 |
T |
|
| Q |
101 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
18504601 |
gggaaatacttctctagaaacttaagctataattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgattaaag |
18504700 |
T |
|
| Q |
201 |
tgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
18504701 |
tgaacgggaatagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
18504764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 22018547 - 22018288
Alignment:
| Q |
5 |
agcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacataggga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22018547 |
agcaaattgaacctttcccaagcatcatacaatgattcactttcaccttgccgaaagcttgctatttcttgcttcttatccaagtacttggacataggga |
22018448 |
T |
|
| Q |
105 |
aatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
22018447 |
aatacttctctagaaacttaagctctaattcttcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccggttaaagtgaa |
22018348 |
T |
|
| Q |
205 |
cgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|| || ||||| |||||||||||||| | | |||||||| ||||||||||| |||||| |
|
|
| T |
22018347 |
cgaaaatagcctaagtttcttttggtcatcagtaacatttgctggaggaacacaaaactc |
22018288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 263
Target Start/End: Complemental strand, 11785960 - 11785769
Alignment:
| Q |
71 |
tcttgcttcttatccaagtacttggacatagggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtca |
170 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||| ||||||| | |||| | ||||||| ||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
11785960 |
tcttgtttcttgtctaagtacttggacataggtaaa-acttctccaaaaacctcagctctagctcctcccatgtttgaattgtaccattaggtaaagtca |
11785862 |
T |
|
| Q |
171 |
ataaccagtctttagctttaccgtttaaagtgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaact |
263 |
Q |
| |
|
|||||||||||||||||| || | |||||||| || || | | | |||||||||||||||| | |||||||| |||||| |||| ||||| |
|
|
| T |
11785861 |
gcaaccagtctttagctttatcggtcaaagtgaaaggaaacaacatcagtttcttttggtcttcagtaacatttgctggaggtacacaaaact |
11785769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0661
Description:
Target: scaffold0661; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 8081 - 7818
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8081 |
cagaagcaaattgaatctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
7982 |
T |
|
| Q |
101 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
7981 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttacctattaatg |
7882 |
T |
|
| Q |
201 |
tgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
7881 |
tgaacggtaaaagcctgagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
7818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 22921700 - 22921437
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22921700 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcaccttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
22921601 |
T |
|
| Q |
101 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22921600 |
gggaaatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattgggaaaagtcaataaccagtctttagctttaccgattaaag |
22921501 |
T |
|
| Q |
201 |
tgaacgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| || |||||||| ||||||||||| |||||| |
|
|
| T |
22921500 |
tgaacgggaatagcctcagtttcttttggtcttcattaacatttgctggaggaacacaaaactc |
22921437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 24401355 - 24401096
Alignment:
| Q |
5 |
agcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacataggga |
104 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24401355 |
agcaaattgaatctttcccaggcatcatagagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaagtatttggacataggga |
24401256 |
T |
|
| Q |
105 |
aatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaa |
204 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||| | || ||| |||| ||||| |
|
|
| T |
24401255 |
aatacttttctagaaaattaagctctaactcctcccatgtttgaatagtcccattaggcaaattcaacaaccagtctttaccctttccggttaacgtgaa |
24401156 |
T |
|
| Q |
205 |
cgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||| ||||| |||||||||||||||| | ||||||||||||||| |||| |||||| |
|
|
| T |
24401155 |
ggggaatagcctcagtttcttttggtcttcagtaacatttgttggaggcacacaaaactc |
24401096 |
T |
|
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Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 14703073 - 14702814
Alignment:
| Q |
5 |
agcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacataggga |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14703073 |
agcaaattgaatctttcccaagcatcataaagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaagtacttggacataggga |
14702974 |
T |
|
| Q |
105 |
aatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaa |
204 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
14702973 |
aatacttttctagaaacttaagctctaactcctcccatgtttgaatagtcccattaggcaaagtcaataactagtctttagctttaccggttaaagtgaa |
14702874 |
T |
|
| Q |
205 |
cgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|||||| |||||||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
14702873 |
cgggaatagcctgagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
14702814 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 264
Target Start/End: Complemental strand, 20450 - 20191
Alignment:
| Q |
5 |
agcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacataggga |
104 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20450 |
agcaaattgaatctttcccaagcatcataaagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaagtacttggacataggga |
20351 |
T |
|
| Q |
105 |
aatacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaa |
204 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||| |
|
|
| T |
20350 |
aatacttttctagaaactttagctctaattcttcccatgtttgaatagtcccattaggcaaagttaataactagtctttagctttaccggttaaagtgaa |
20251 |
T |
|
| Q |
205 |
cgggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|| ||| |||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
20250 |
cgtgaatagcctgagtttcttttggtcttctgtaacatttgctggaggaacacaaaactc |
20191 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 264
Target Start/End: Original strand, 25871 - 26128
Alignment:
| Q |
7 |
caaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25871 |
caaattgaacctttcccaagcatcatacagtgattcaccttccccttgccgaaagcttgctatttcttgcttcttatccaagtacttggacatagggaaa |
25970 |
T |
|
| Q |
107 |
tacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacg |
206 |
Q |
| |
|
|| || |||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
25971 |
tatttttctagaaacttaagctctaactcctcccatgtttgaatagtcccattcggtaaagttaataaccaatctttagctttaccggttaaagtgaacg |
26070 |
T |
|
| Q |
207 |
ggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|||| |||||||||||||||||||||| | |||| ||| ||||||||||| |||||| |
|
|
| T |
26071 |
ggaatagcctgagtttcttttggtcttcagtaacagttgctggaggaacacaaaactc |
26128 |
T |
|
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Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 264
Target Start/End: Original strand, 34142162 - 34142409
Alignment:
| Q |
6 |
gcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142162 |
gcaaattgaacctttcccaagcatcatacaatgattcactctcaccttgccgaaagcttgctatttcttgcttcttatccaagtacttggacatagggaa |
34142261 |
T |
|
| Q |
106 |
atacttctctagaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaac |
205 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34142262 |
-----------gaaacttcagctctaattcttcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccggttaaagtgaac |
34142350 |
T |
|
| Q |
206 |
gggaaaagcctgagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
|| || ||||| |||||||||||||||| | || |||| ||||||||||| |||||| |
|
|
| T |
34142351 |
ggaaatagcctaagtttcttttggtcttcagtgacgtttgctggaggaacacaaaactc |
34142409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 131
Target Start/End: Complemental strand, 22141195 - 22141066
Alignment:
| Q |
2 |
agaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatag |
101 |
Q |
| |
|
||||||||||| || |||||| |||||||||| ||||| ||| || |||||||| ||| | | || ||||| ||||||||| | || |||||||||| |
|
|
| T |
22141195 |
agaagcaaattaaatctttcctaagcatcatatagtgactcactctccccttgccgaaagatggaaatctcttgtttcttatcccaatatttggacatag |
22141096 |
T |
|
| Q |
102 |
ggaaatacttctctagaaacttaagctcta |
131 |
Q |
| |
|
| || |||||||| | ||||||||||||| |
|
|
| T |
22141095 |
gaaagtacttctccaagaacttaagctcta |
22141066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 17 - 264
Target Start/End: Original strand, 13274 - 13521
Alignment:
| Q |
17 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
116 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| ||||||| ||| | ||||| ||||| |||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
13274 |
ctttcccaagcatcataaagtgactcaccttccccttgcctaaagttggctatctcttgtttcttatccaggtacttggacatagggaaaaacttctcta |
13373 |
T |
|
| Q |
117 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
216 |
Q |
| |
|
|||||| ||||| | || ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
13374 |
aaaacttcagctccagctcatcccatgtttggatggtcccattaggaaatgtcaataaccagtctttagctttaccggttaaagtgaacgggaatagcct |
13473 |
T |
|
| Q |
217 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
13474 |
gagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
13521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 11573 - 11326
Alignment:
| Q |
17 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
116 |
Q |
| |
|
||||||||| ||||||||||||| ||| |||| ||||||| ||| | ||||| ||||| |||||||| | ||||||||||||||||||| |||||| || |
|
|
| T |
11573 |
ctttcccaatcatcataaagtgactcaccttccccttgcctaaagttggctatctcttgtttcttatctaggtacttggacatagggaaaaacttctata |
11474 |
T |
|
| Q |
117 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
216 |
Q |
| |
|
||||||||||||||| || |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
11473 |
aaaacttaagctctaactcatcccatgtttgaatggtctcattaggaaaagtcaataaccagtctttagctttaccggttaaagtgaacgggaatagcct |
11374 |
T |
|
| Q |
217 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||||||||| || || | || ||||| ||||||||||| |||||| |
|
|
| T |
11373 |
gagtttctttttgtgttcactaaaatttgctggaggaacacaaaactc |
11326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 13843794 - 13843547
Alignment:
| Q |
17 |
ctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacatagggaaatacttctcta |
116 |
Q |
| |
|
||||||||||||||||||||||| ||| |||| || ||| ||| | ||||| |||| |||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
13843794 |
ctttcccaagcatcataaagtgactcaccttccccgtgcataaagttggctatcccttgtttcttatccaggtacttggacatagggaaaaacttctcta |
13843695 |
T |
|
| Q |
117 |
gaaacttaagctctaattcctcccatgtttgaatagtcccattaggcaaagtcaataaccagtctttagctttaccgtttaaagtgaacgggaaaagcct |
216 |
Q |
| |
|
|||||| || || || || || |||||||| || |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
13843694 |
aaaacttcaggtccaactcatctcatgtttggatggtcccattcggcaaagtcaataaccagtctttagctttaccggttaaagtgaacgggaatagcct |
13843595 |
T |
|
| Q |
217 |
gagtttcttttggtcttgatcaacatttgttggaggaacaccaaactc |
264 |
Q |
| |
|
||||||||||||||||| | |||||||| ||||||||||| |||||| |
|
|
| T |
13843594 |
gagtttcttttggtcttcagtaacatttgctggaggaacacaaaactc |
13843547 |
T |
|
Back To:
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Target: scaffold0035 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 48024 - 47862
Alignment:
| Q |
1 |
cagaagcaaattgaacctttcccaagcatcataaagtgattcatcttcaccttgccggaagcttgctatttcttgcttcttatccaagtacttggacata |
100 |
Q |
| |
|
||||||||| || || || |||||| |||||||||||| |||| || ||||||| || |||| || ||||| ||||| ||| | || ||||||||| |
|
|
| T |
48024 |
cagaagcaagttaaatctctcccaaacatcataaagtgtttcactctctccttgcctaaactttgcaatctcttgtttcttgtcccaatatttggacata |
47925 |
T |
|
| Q |
101 |
gggaaatacttctctagaaac----ttaagctctaattcctcccatgtttgaatagtcccatt |
159 |
Q |
| |
|
|| || |||||||||| ||| ||||||||||| || |||||||||||||| || ||||| |
|
|
| T |
47924 |
ggaaattacttctctaagaacttaattaagctctaactcttcccatgtttgaatggttccatt |
47862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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