View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7122_low_12 (Length: 245)
Name: NF7122_low_12
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 35503066 - 35503301
Alignment:
| Q |
1 |
tgaagatgtgatttacttcactgattcaagcacagtctaccggagaaggtaacttcactactaaaccttacctcctttttcaatagtcatgtgtgtctac |
100 |
Q |
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| T |
35503066 |
tgaagatgtgatttacttcactgattcaagcacagtctaccggagaaggtaacttcactactaaaccttacctcctttttcaatagtcatgtgtgtctac |
35503165 |
T |
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| Q |
101 |
atcttgtaaaacaacattgctattgtgtatgcaattttttgtacgaaatacacttcagaacatcattcgttgcttttgtgcatagtgcgatttgtagact |
200 |
Q |
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| T |
35503166 |
atcttgtaaaacaacattgctattgtgtatgcaattttttgtacgaaatacacttcagaacatcattcgttgcttttgtgcatagtgcgatttgtagact |
35503265 |
T |
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| Q |
201 |
ccagcatatttcctaaataaatagtccttatgatgt |
236 |
Q |
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| T |
35503266 |
ccagcatttttcctaaataaatagtccttatgatgt |
35503301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35511373 - 35511427
Alignment:
| Q |
1 |
tgaagatgtgatttacttcactgattcaagcacagtctaccggagaaggtaactt |
55 |
Q |
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| T |
35511373 |
tgaagatgtgatttactttactgattcaagctcagtttatcagagaaggtaactt |
35511427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 35489612 - 35489650
Alignment:
| Q |
1 |
tgaagatgtgatttacttcactgattcaagcacagtcta |
39 |
Q |
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| T |
35489612 |
tgaaggtgttatttacttcactgattcaagcacagtcta |
35489650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 40160268 - 40160346
Alignment:
| Q |
1 |
tgaagatgtgatttacttcactgattcaagcacagtctaccggagaaggtaacttcactactaaaccttacctcctttt |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||| |||| |||||||| |||||| |||| |
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| T |
40160268 |
tgaagatgtgatttacttcactgattcaagcacagtctatcagagaaggtaagttcaatactaaacagtacctcatttt |
40160346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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