View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7122_low_13 (Length: 243)
Name: NF7122_low_13
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 35136637 - 35136426
Alignment:
| Q |
17 |
acttagcagttagataagatgcactagttccttcttttgacatgatgaagaagctgagagttcctaattaaaaagataatgatgaatgaaatatgctgtt |
116 |
Q |
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| T |
35136637 |
acttagcagttagagaagatgcactagttccttcttttgacatgatgaagaagctgagagttcctaattaaaaagataatgatgaatgaaatatgctgtt |
35136538 |
T |
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| Q |
117 |
tcattgtgcaaaatcaagatagcaattattattgtttannnnnnngacaaaattattatttcttttgaagtggaaaaaagatcacaatgttaataattag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35136537 |
tcattgtgcaaaatcaagatagcaattattattgtttatttttttgacaaaattattatttcttttgaagtggaaaaaagatcacaatgttaataattag |
35136438 |
T |
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| Q |
217 |
agtgtaagaata |
228 |
Q |
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|||||||||||| |
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| T |
35136437 |
agtgtaagaata |
35136426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 35144912 - 35144785
Alignment:
| Q |
21 |
agcagttagataagatgcactagttccttcttttgacatgatgaagaagctgagagttcctaattaaaaagataatgatgaatgaaatatgctgtttcat |
120 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | ||| ||||||||||| |||||| |
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| T |
35144912 |
agcagttagaaaagatgcactagttccttcttttgacatgacgaagaagctgagaattcctaattaaaaaaaaaat----tatgaaatatgcagtttcaa |
35144817 |
T |
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| Q |
121 |
tgtgcaaaatcaagatagcaattattattgtt |
152 |
Q |
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||||||||||||||| |||| ||||||||||| |
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| T |
35144816 |
tgtgcaaaatcaagagagcatttattattgtt |
35144785 |
T |
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