View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7122_low_15 (Length: 202)

Name: NF7122_low_15
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7122_low_15
NF7122_low_15
[»] chr6 (3 HSPs)
chr6 (14-170)||(2620988-2621146)
chr6 (17-73)||(2589508-2589564)
chr6 (138-186)||(2589392-2589440)
[»] chr2 (1 HSPs)
chr2 (13-78)||(44093710-44093775)
[»] chr3 (2 HSPs)
chr3 (12-67)||(35558723-35558778)
chr3 (113-149)||(38143415-38143451)
[»] chr1 (1 HSPs)
chr1 (12-78)||(36801922-36801988)
[»] chr5 (3 HSPs)
chr5 (14-69)||(33766302-33766357)
chr5 (12-78)||(8940899-8940965)
chr5 (12-51)||(10376252-10376292)
[»] chr4 (1 HSPs)
chr4 (17-67)||(48420738-48420788)


Alignment Details
Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 2621146 - 2620988
Alignment:
Q  14 cacacacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatctttcnnnnnnnn--ttatttgtaagtgtgaatttaaaa 111  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||           | ||||||||||||| ||||||||    
T  2621146 cacacacaaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatctttaaaaaaaaacatcatttgtaagtgtgtatttaaaa 2621047  T
Q  112 gaaattcatttaggattgtgttcaagttagaatttctctagtttgagaaaagatgggaa 170  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2621046 gaaattcatttaggattgtgttcaagttagaatttctctaatttgagaaaagatgggaa 2620988  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 2589564 - 2589508
Alignment:
Q  17 acacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctctta 73  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  2589564 acacaaatgtaaaaaattaaaagagaaatgatttagttgcattatttaaatctctta 2589508  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Complemental strand, 2589440 - 2589392
Alignment:
Q  138 ttagaatttctctagtttgagaaaagatgggaatattcttgcataaact 186  Q
    |||||||||||||| ||||||||| ||| ||||||||||||||||||||    
T  2589440 ttagaatttctctaatttgagaaaggataggaatattcttgcataaact 2589392  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 78
Target Start/End: Original strand, 44093710 - 44093775
Alignment:
Q  13 gcacacacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 78  Q
    |||||||| ||||||||||||||||||| |||| |||||||  |||||||||||||| ||||||||    
T  44093710 gcacacacaaatgtaaaaaattaaaagaaaaattatttagtaacatcatttaaatctattatcttt 44093775  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 35558778 - 35558723
Alignment:
Q  12 cgcacacacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaat 67  Q
    ||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||    
T  35558778 cgcacacacaaatgtaaaaaattaaaagaaaaattatttagttacatcatttaaat 35558723  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 38143451 - 38143415
Alignment:
Q  113 aaattcatttaggattgtgttcaagttagaatttctc 149  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  38143451 aaattaatttagggttgtgttcaagttagaatttctc 38143415  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 36801922 - 36801988
Alignment:
Q  12 cgcacacacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 78  Q
    ||||||||| ||||||||||||| |||||||||  |||||||  |||||||||||||| || |||||    
T  36801922 cgcacacacaaatgtaaaaaatttaaagagaaagtatttagtcacatcatttaaatctattctcttt 36801988  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 33766357 - 33766302
Alignment:
Q  14 cacacacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatct 69  Q
    ||||||| |||||||||||||||||||||||| |||| ||   |||||||||||||    
T  33766357 cacacacaaatgtaaaaaattaaaagagaaattatttggtcatatcatttaaatct 33766302  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 8940899 - 8940965
Alignment:
Q  12 cgcacacacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaatctcttatcttt 78  Q
    ||||||||| ||||||||| ||||||| | ||||||||||||  |||||||||| ||| || |||||    
T  8940899 cgcacacacaaatgtaaaatattaaaatataaatgatttagtcacatcatttaattcttttttcttt 8940965  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 10376292 - 10376252
Alignment:
Q  12 cgcacacacgaatgta-aaaaattaaaagagaaatgattta 51  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  10376292 cgcacacacaaatgtataaaaattaaaagagaaatgattta 10376252  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 48420738 - 48420788
Alignment:
Q  17 acacgaatgtaaaaaattaaaagagaaatgatttagttgcatcatttaaat 67  Q
    |||| |||||| |||||||||||| |||| |||||||| ||||||||||||    
T  48420738 acacaaatgtagaaaattaaaagaaaaattatttagttacatcatttaaat 48420788  T

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