View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7122_low_3 (Length: 435)
Name: NF7122_low_3
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 6 - 428
Target Start/End: Original strand, 44966295 - 44966716
Alignment:
| Q |
6 |
tcaatctctcaagtatagtattttgattagattgctatctcaaaagattcaaagtaacaatatttcgtcttgtgactgtgtgagcattgatatgacttca |
105 |
Q |
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| T |
44966295 |
tcaatctctcaagtatagtattttgattagattgctatctcaaaagattcaaagtaacaatatttcgtcttgtgactgtgtgagcattgatatgacttca |
44966394 |
T |
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| Q |
106 |
atgtcgtatgatgtatctgaatcatcataattaatagtactagctcactagtactttttgaaatagatactttaatggagaaaagggcaaagggggagcc |
205 |
Q |
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| T |
44966395 |
atgtcatatgatgtatctgaatcatcataattagtagtactagctcactagttctttttgaaatagatactttaatggagaaaagggcaaagg------- |
44966487 |
T |
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| Q |
206 |
gggagaggagaggaattacaaatactttgtttgagatcatcataaatatgggtcatctaatatttgtcaattgtcatcnnnnnnnttaagactaacattt |
305 |
Q |
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| T |
44966488 |
gagagaggagaggaattacaaatactttgtttcagatcatcataaatatgggtcatctaatatttgtcaattgtcatc-aaaaaattaagactaacattt |
44966586 |
T |
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| Q |
306 |
ttgcattttggt------nnnnnnnnnnnnttgcattgaaataacatcttttaaatgtttaaacagtcgaatataaaattctaaaataaaattttcatac |
399 |
Q |
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| T |
44966587 |
ttgcattttggtaaaaaaaataaattaaaattgcattgaaaaaacatcttttaaatgtttaaacagtcgaatataaaattctaaaataaaattttcatat |
44966686 |
T |
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| Q |
400 |
caaattc-tttaacattttatattcttcga |
428 |
Q |
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| T |
44966687 |
taaaatcttttaacattttatattgttcga |
44966716 |
T |
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