View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7122_low_4 (Length: 426)
Name: NF7122_low_4
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 19 - 406
Target Start/End: Original strand, 1331627 - 1332017
Alignment:
| Q |
19 |
agagggtcaaatcttgtttcctaaaggccgaatcctctaggatcaagtcatgttttctcatgtttttctcattgtaaaaattatttatgctatatcattg |
118 |
Q |
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| T |
1331627 |
agagggtcaaatcttgtttcctaaaggcggaatcctctaggatcaagtcatgttttctcatgtttttctcattgtaaaaattatttatgctatatcattg |
1331726 |
T |
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| Q |
119 |
tatatctatcaaactctaaagtttaaaactcttttgaatatatttatttgaagttatctgttaaatttccnnnnnnnnnnnnnnnnnnccacagaaactt |
218 |
Q |
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| T |
1331727 |
tatatctatcaaactctaaagtttaaaactcttttgaatatatttatttgaagttatctgttaaatttcctttttgtttttggtttttccacagaaactt |
1331826 |
T |
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| Q |
219 |
ccttcatgtttggtgtaagcaaccaagagggaagtggggactgggaagaatacagtcaacttcaggagtacaagcatcagtttcactctcaaatggaaat |
318 |
Q |
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| T |
1331827 |
ccttcatgtttggtgtaagcaaccaagagggaagtggggactgggaagaatacagtcaacttcaggagtacaagcatcagtttcactctcaaatggaaat |
1331926 |
T |
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| Q |
319 |
gtaaacttttaaattttgtgtctttataagatag---tattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgc |
406 |
Q |
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| T |
1331927 |
gtaaacttttaaattttgtgtctttataagatagtactattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgc |
1332017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 220 - 406
Target Start/End: Original strand, 33970334 - 33970518
Alignment:
| Q |
220 |
cttcatgtttggtgtaagcaaccaagagggaagtggggactgggaagaatacagtcaacttcaggagtacaagcatcagtttcactctcaaatggaaatg |
319 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
33970334 |
cttcatgtttggtgtaggcaaccaagagggaagtggggactgggaagaatacaatcaacttctggagaacaagcatcagtttcactctcaaatggaaatg |
33970433 |
T |
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| Q |
320 |
taaacttttaaattttgtgtctttataagatagtattcattgttgagtatgcaagataacatgctatttatgttgataagttgttgc |
406 |
Q |
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||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
33970434 |
taaacttctaaattt--tgtctttataagatagtcttcattgttgagtatgcaagataacatgctatttgtgttgatgagttgttgc |
33970518 |
T |
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