View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7122_low_6 (Length: 375)
Name: NF7122_low_6
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 40031456 - 40031111
Alignment:
| Q |
18 |
gtcaattaaccgaagaataacaatggtaatacaacagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcag |
117 |
Q |
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| T |
40031456 |
gtcaataaaccgaagaataacaatggtaatacaacagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcag |
40031357 |
T |
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| Q |
118 |
caactcaagagtcaaaagatcttaacgaacttgaatgatttgcaagcatagcagacatcccatannnnnnnnctcagcaagattaattacatagagaaat |
217 |
Q |
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| T |
40031356 |
catctcaagagtcaaaagatcttaacgaacttgaatgatttgcaagcatagcagacatcccatattttttttctcagcaagattaattacatagagaaat |
40031257 |
T |
|
| Q |
218 |
ctctaaacacatatgattccaaactcaaagcagatttacaagcagcacaagaagccttactaattctaacaaatatctaattttagcattagtataatga |
317 |
Q |
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| T |
40031256 |
ctctaaacacacatgattccaaactcaaagcagatttacaagcagcacaagaagccttactaattctaacaaatatctaattttagcattagtataatga |
40031157 |
T |
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| Q |
318 |
actcctaaaggctgaataaagccatagcgagactgtacagtgatgt |
363 |
Q |
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| T |
40031156 |
actcctaaaggctgaataaagccatagcgagactgtacagtgatgt |
40031111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 233 - 350
Target Start/End: Complemental strand, 40036531 - 40036414
Alignment:
| Q |
233 |
attccaaactcaaagcagatttacaagcagcacaagaagccttactaattctaacaaatatctaattttagcattagtataatgaactcctaaaggctga |
332 |
Q |
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| T |
40036531 |
attccaaactcaaagcacatttacaagtaccacaagaagccttactaattctaacaaatatctaattttagcattaatataatgaactcttaaagactga |
40036432 |
T |
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| Q |
333 |
ataaagccatagcgagac |
350 |
Q |
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| T |
40036431 |
ataaaaccatagcaagac |
40036414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 30 - 229
Target Start/End: Complemental strand, 40036788 - 40036597
Alignment:
| Q |
30 |
aagaataacaatggtaatacaacagaaaaacaagtcatggagaaga-ttatgcaaacactatcaagatgattcaattacgccatagcagcaactcaagag |
128 |
Q |
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||||||||||||||||||| |||||||| |||||||| ||| || | |||||||||||||| ||||||| ||||||||| |||||||||||| | | | |
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| T |
40036788 |
aagaataacaatggtaatataacagaaatacaagtcaaggaaaaaaattatgcaaacactaacaagatggttcaattacaacatagcagcaaccaagggg |
40036689 |
T |
|
| Q |
129 |
tcaaaagatcttaacgaacttgaatgatttgcaagcatagcagacatcccatannnnnnnnctcagcaagattaattacat-agagaaatctctaaacac |
227 |
Q |
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| T |
40036688 |
tcaaaatat-------accttgaatgatttgcaagcatagcagacatcccat---ttttttcttagcaagattaattgcataagagaaatctctaaacac |
40036599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 166
Target Start/End: Original strand, 1347004 - 1347132
Alignment:
| Q |
44 |
taatacaacagaaaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcaactcaagagtc-aaaagatctt-- |
140 |
Q |
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||||| ||||||||||||||||||| |||| ||| || | |||||| | |||||| ||||||||| ||||| ||||| ||||||||| |||||||||| |
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| T |
1347004 |
taatataacagaaaaacaagtcatgaagaaaattgtgtatacactaacgagatgaatcaattacgtcatagaagcaattcaagagtcaaaaagatcttat |
1347103 |
T |
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| Q |
141 |
---aacgaacttgaatgatttgcaagcat |
166 |
Q |
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|| || |||||||||||||||||||| |
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| T |
1347104 |
ctcaaagaccttgaatgatttgcaagcat |
1347132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 19807748 - 19807670
Alignment:
| Q |
61 |
aagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcaactcaagagtcaaaagatct |
139 |
Q |
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||||||||||||| ||| ||| ||||||| |||| |||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
19807748 |
aagtcatggagaaaattgtgctaacactaacaagctgattcaattacgcattagcagcaattgaagagtcaaaagatct |
19807670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 19968685 - 19968768
Alignment:
| Q |
56 |
aaaacaagtcatggagaagattatgcaaacactatcaagatgattcaattacgccatagcagcaactcaagagtcaaaagatct |
139 |
Q |
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|||| ||||||||||||| |||||| |||| | |||| ||||||||||||||| ||||||||| |||||||| |||| |||| |
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| T |
19968685 |
aaaagaagtcatggagaaagttatgcgcacacaaacaagttgattcaattacgccgtagcagcaattcaagagtaaaaatatct |
19968768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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