View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7122_low_7 (Length: 329)

Name: NF7122_low_7
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7122_low_7
NF7122_low_7
[»] chr8 (31 HSPs)
chr8 (9-301)||(33369269-33369562)
chr8 (69-247)||(25370883-25371062)
chr8 (69-251)||(25705652-25705832)
chr8 (120-312)||(33748831-33749024)
chr8 (120-312)||(31822886-31823070)
chr8 (228-313)||(37525332-37525418)
chr8 (193-312)||(25371594-25371719)
chr8 (210-312)||(9876055-9876157)
chr8 (228-312)||(461671-461756)
chr8 (139-305)||(42895275-42895429)
chr8 (233-305)||(1321829-1321901)
chr8 (228-305)||(33159160-33159236)
chr8 (232-312)||(38881895-38881977)
chr8 (233-305)||(32823816-32823888)
chr8 (142-261)||(13283396-13283516)
chr8 (233-305)||(24527316-24527388)
chr8 (122-261)||(11719994-11720134)
chr8 (214-313)||(40019648-40019748)
chr8 (214-313)||(28432711-28432810)
chr8 (144-261)||(13107372-13107490)
chr8 (122-261)||(8608806-8608946)
chr8 (181-261)||(22273342-22273422)
chr8 (122-261)||(26239277-26239417)
chr8 (193-261)||(27404788-27404856)
chr8 (193-261)||(38548284-38548352)
chr8 (199-294)||(11790308-11790403)
chr8 (193-261)||(15307704-15307772)
chr8 (193-261)||(15488073-15488141)
chr8 (194-261)||(29238607-29238674)
chr8 (175-242)||(41041298-41041365)
chr8 (181-233)||(42942869-42942921)
[»] chr3 (28 HSPs)
chr3 (70-305)||(33112344-33112580)
chr3 (69-304)||(2975929-2976164)
chr3 (69-305)||(1847014-1847251)
chr3 (138-312)||(23775072-23775248)
chr3 (139-305)||(48634793-48634960)
chr3 (120-312)||(45897534-45897729)
chr3 (117-294)||(35862055-35862233)
chr3 (237-313)||(31886012-31886088)
chr3 (229-305)||(24382217-24382293)
chr3 (122-261)||(51685760-51685900)
chr3 (233-312)||(33851476-33851555)
chr3 (124-261)||(27897759-27897897)
chr3 (233-312)||(45255977-45256058)
chr3 (122-261)||(7883893-7884033)
chr3 (122-261)||(35904393-35904533)
chr3 (233-304)||(18429243-18429314)
chr3 (214-312)||(26448240-26448338)
chr3 (214-313)||(37886267-37886367)
chr3 (122-261)||(42281882-42282022)
chr3 (214-305)||(41945600-41945691)
chr3 (193-261)||(41978805-41978873)
chr3 (193-261)||(53188344-53188412)
chr3 (175-261)||(23292138-23292224)
chr3 (175-261)||(24846010-24846096)
chr3 (125-233)||(2378326-2378435)
chr3 (117-261)||(22218719-22218864)
chr3 (122-260)||(48829679-48829818)
chr3 (122-274)||(32842963-32843116)
[»] chr1 (26 HSPs)
chr1 (70-312)||(18183101-18183344)
chr1 (120-313)||(46637260-46637454)
chr1 (121-312)||(31803102-31803294)
chr1 (122-312)||(42558441-42558633)
chr1 (233-305)||(33679742-33679814)
chr1 (233-305)||(42135761-42135833)
chr1 (233-305)||(44158807-44158879)
chr1 (233-312)||(45379579-45379658)
chr1 (233-314)||(35478578-35478660)
chr1 (233-314)||(6576621-6576703)
chr1 (142-261)||(27088646-27088766)
chr1 (122-238)||(6817468-6817585)
chr1 (142-261)||(1443559-1443679)
chr1 (122-261)||(9120647-9120787)
chr1 (142-242)||(26224208-26224309)
chr1 (142-242)||(33599806-33599907)
chr1 (214-313)||(5784366-5784466)
chr1 (193-261)||(34777136-34777204)
chr1 (122-261)||(52642471-52642611)
chr1 (214-313)||(11153037-11153136)
chr1 (181-233)||(3012450-3012502)
chr1 (193-261)||(4854965-4855033)
chr1 (122-233)||(31237414-31237526)
chr1 (193-261)||(47012047-47012115)
chr1 (175-230)||(51895165-51895220)
chr1 (193-233)||(50554775-50554815)
[»] chr5 (26 HSPs)
chr5 (70-312)||(35291540-35291781)
chr5 (70-305)||(43317232-43317466)
chr5 (139-312)||(32836372-32836546)
chr5 (120-312)||(18727059-18727253)
chr5 (120-315)||(32089329-32089519)
chr5 (167-305)||(40329963-40330101)
chr5 (146-305)||(38177136-38177296)
chr5 (146-305)||(38204360-38204520)
chr5 (120-312)||(33257173-33257354)
chr5 (145-305)||(35400145-35400295)
chr5 (122-242)||(2181111-2181232)
chr5 (142-261)||(21842362-21842482)
chr5 (142-264)||(17575295-17575418)
chr5 (142-264)||(17576015-17576138)
chr5 (142-264)||(17577326-17577449)
chr5 (175-242)||(41494420-41494487)
chr5 (142-261)||(29620746-29620866)
chr5 (193-261)||(40781641-40781709)
chr5 (193-261)||(42472127-42472195)
chr5 (193-294)||(18341578-18341679)
chr5 (193-294)||(28035985-28036086)
chr5 (214-267)||(42619822-42619875)
chr5 (210-261)||(27076959-27077010)
chr5 (175-242)||(34328267-34328334)
chr5 (142-261)||(7268857-7268976)
chr5 (193-261)||(18624012-18624080)
[»] chr7 (30 HSPs)
chr7 (150-312)||(38614268-38614431)
chr7 (85-288)||(11683933-11684137)
chr7 (142-313)||(2168276-2168450)
chr7 (142-312)||(23954727-23954898)
chr7 (120-312)||(46995157-46995350)
chr7 (233-314)||(36756398-36756480)
chr7 (233-314)||(36762195-36762277)
chr7 (122-313)||(34692157-34692349)
chr7 (233-313)||(46811197-46811277)
chr7 (228-313)||(40785079-40785165)
chr7 (122-265)||(38550085-38550229)
chr7 (233-313)||(47340459-47340540)
chr7 (122-242)||(48851134-48851255)
chr7 (233-304)||(3690654-3690725)
chr7 (214-313)||(4321574-4321673)
chr7 (123-268)||(32840810-32840953)
chr7 (142-261)||(20479080-20479200)
chr7 (214-313)||(45464683-45464783)
chr7 (142-261)||(47384851-47384971)
chr7 (193-261)||(77469-77537)
chr7 (214-313)||(30109085-30109185)
chr7 (263-312)||(33037988-33038037)
chr7 (181-242)||(37114516-37114577)
chr7 (193-261)||(45360748-45360816)
chr7 (214-306)||(48302652-48302744)
chr7 (175-237)||(48311337-48311399)
chr7 (150-261)||(22155268-22155380)
chr7 (150-261)||(22211183-22211295)
chr7 (193-261)||(34775607-34775675)
chr7 (193-261)||(46438203-46438271)
[»] chr4 (25 HSPs)
chr4 (142-312)||(4519892-4520063)
chr4 (228-304)||(51041238-51041314)
chr4 (233-314)||(44557101-44557183)
chr4 (234-314)||(27626246-27626327)
chr4 (122-261)||(54387284-54387424)
chr4 (117-312)||(28101075-28101271)
chr4 (240-305)||(35997284-35997349)
chr4 (122-242)||(48645594-48645715)
chr4 (214-313)||(39084651-39084751)
chr4 (214-313)||(39190318-39190418)
chr4 (237-312)||(2349254-2349329)
chr4 (123-260)||(27385854-27385992)
chr4 (193-261)||(833801-833869)
chr4 (193-261)||(5439090-5439158)
chr4 (214-313)||(39922506-39922606)
chr4 (214-313)||(42879776-42879876)
chr4 (214-313)||(43778879-43778979)
chr4 (214-313)||(32653130-32653229)
chr4 (215-312)||(10544498-10544596)
chr4 (214-295)||(5485551-5485632)
chr4 (193-261)||(51013339-51013407)
chr4 (175-242)||(11254644-11254711)
chr4 (175-242)||(41760313-41760380)
chr4 (215-313)||(44993300-44993399)
chr4 (175-261)||(42981939-42982025)
[»] chr2 (18 HSPs)
chr2 (139-305)||(37418187-37418355)
chr2 (120-301)||(35789-35970)
chr2 (139-305)||(42880233-42880398)
chr2 (233-305)||(42002990-42003062)
chr2 (227-309)||(11313318-11313400)
chr2 (197-257)||(10715642-10715702)
chr2 (214-313)||(28247674-28247774)
chr2 (193-261)||(6783932-6784000)
chr2 (214-313)||(11022025-11022125)
chr2 (142-261)||(37021547-37021667)
chr2 (175-261)||(17697570-17697656)
chr2 (228-261)||(25620572-25620605)
chr2 (181-242)||(40561319-40561380)
chr2 (193-261)||(2768295-2768363)
chr2 (214-313)||(38149535-38149635)
chr2 (122-233)||(39663737-39663849)
chr2 (122-260)||(19581735-19581874)
chr2 (270-305)||(42003159-42003194)
[»] chr6 (13 HSPs)
chr6 (122-261)||(6902299-6902439)
chr6 (122-261)||(9399458-9399598)
chr6 (122-260)||(33267593-33267732)
chr6 (214-313)||(34344824-34344923)
chr6 (214-313)||(17951052-17951152)
chr6 (193-261)||(32454856-32454924)
chr6 (175-260)||(7050962-7051047)
chr6 (122-261)||(32437726-32437866)
chr6 (193-260)||(10569620-10569687)
chr6 (214-295)||(35174893-35174974)
chr6 (193-261)||(11356607-11356675)
chr6 (200-288)||(17936022-17936110)
chr6 (193-261)||(20524789-20524857)
[»] scaffold0004 (1 HSPs)
scaffold0004 (122-287)||(107205-107371)
[»] scaffold0345 (1 HSPs)
scaffold0345 (193-261)||(968-1036)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 33369562 - 33369269
Alignment:
Q  9 gaagaatatacattgccaaacagaacaataactagttaatgttgttagaaaaattttggcattcaaaatcagtcatgtgttgttcaaaccaagatgacat 108  Q
    |||| |||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||    
T  33369562 gaaggatatacattgccaaacagaagaataactagctaatgttgttagaaacattttggcattcaaaatcagtcctatgttgttcaaaccaagatgacat 33369463  T
Q  109 cacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtt-ttttacagtattggttttactaacaacacaaattcta 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33369462 cacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttttacagtattggttttactaacaacacaaattcta 33369363  T
Q  208 gaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccac 301  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  33369362 ggacaccaacattcaagcgctctcacatcaccattaaatttggagcttgaagataaagctcaactttcataaccgttttttctcatattcccac 33369269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 69 - 247
Target Start/End: Complemental strand, 25371062 - 25370883
Alignment:
Q  69 attcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctg- 167  Q
    ||||||||| ||| |||||||||||||||||||||||||||| |||||||||| ||||| |||| |||| |||||||||||||||||| | ||||||||     
T  25371062 attcaaaatgagtaatgtgttgttcaaaccaagatgacatcaaatgtttaataattaaaaaaacctttggcatagggcaagcatagaaaggccttcctga 25370963  T
Q  168 gttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaact 247  Q
    |||||| || ||||||  ||| || |||||||||||||||||||||||||| |||||  |||||||||||||||||||||    
T  25370962 gtttttcactgtattgacttttcttacaacacaaattctagaacaccaacagtcaagtactctcacatcaccattaaact 25370883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 25705832 - 25705652
Alignment:
Q  69 attcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg 168  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||  ||| |   |||||||||||||| | |||||||||    
T  25705832 attcaaaatcagtaatgtgttgttcaaaccaagatgacatcaaatgtttaataattaaacaaaccattggc---gggcaagcatagaaaggccttcctgg 25705736  T
Q  169 tttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttgga 251  Q
     ||||| |||||||||| ||| || |||||||||| ||||| ||||||||| |||||  |||||||||||||||||||||||||    
T  25705735 gtttttcacagtattggcttttcttacaacacaaaatctaggacaccaacagtcaagtactctcacatcaccattaaacttgga 25705652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 312
Target Start/End: Complemental strand, 33749024 - 33748831
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctg-gttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||| ||| ||| |||| || ||||||||||||||||| ||||| || |||||||  |||||||| ||| ||||||||||||||| ||| |||||||||    
T  33749024 tagttgaaccaacctttggcagagggcaagcatagaatggccttcatgagttttttgaagtattggattttctaacaacacaaattgtaggacaccaaca 33748925  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    ||||||| |||||||| ||| |||||||||||||||||||||| || ||  ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  33748924 ttcaagcactctcacaacactattaaacttggagcttgaagatgaaacttgactttcataaccgtttttt-ccatattcccaccccacatcattt 33748831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 120 - 312
Target Start/End: Original strand, 31822886 - 31823070
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||||||| ||| |||| || ||||||||||||||||| ||||||||| ||||||  |||||||| ||| ||||||||||||||| ||| |||||||||    
T  31822886 tagttaaaccaacctttggcagagggcaagcatagaatggccttcctgggttttttgaagtattggattttctaacaacacaaattgtaggacaccaaca 31822985  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||          ||||||||| ||||||||||||||||||||||| ||||||||    
T  31822986 ttcaagcactctcacaacaccattaaacttggagtttgaagat----------tttcataaccgttttttcccatattcccaccccacatcattt 31823070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 228 - 313
Target Start/End: Complemental strand, 37525418 - 37525332
Alignment:
Q  228 tctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccac-ccccatcatttt 313  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  37525418 tctcacatcaccattaaacttggagcttgaagatgaagctcgactttcataactgttttttcccatattcccaccccccatcatttt 37525332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 193 - 312
Target Start/End: Original strand, 25371594 - 25371719
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcac-----atcaccattaaacttggagcttgaagataaagctcaactttcataactgttttt 287  Q
    |||||||||||||||| ||||||| |||||||| |||||||     |||||||||||||||||||||||||||| |||||| || |||||||||||||||    
T  25371594 acaacacaaattctaggacaccaatattcaagcactctcacatcacatcaccattaaacttggagcttgaagatgaagctcgacattcataactgttttt 25371693  T
Q  288 tcccatattcccacccc-catcattt 312  Q
    |||||||| |||||||| ||||||||    
T  25371694 tcccatatgcccacccctcatcattt 25371719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 9876055 - 9876157
Alignment:
Q  210 acaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatca 309  Q
    ||||||||||||||||  |||||||  ||||||||||||||||| ||||||| |||||  ||||||||||| ||||||||||||||||||||||||||||    
T  9876055 acaccaacattcaagcattctcacaataccattaaacttggagcctgaagatgaagcttgactttcataacagttttttcccatattcccacccccatca 9876154  T
Q  310 ttt 312  Q
    |||    
T  9876155 ttt 9876157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 228 - 312
Target Start/End: Complemental strand, 461756 - 461671
Alignment:
Q  228 tctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccac-ccccatcattt 312  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||| |||||||||||    
T  461756 tctcacatcaccattaaacttggagcttgaagatgaagctcgactttcataactgtttcttcccatattcccacaccccatcattt 461671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 139 - 305
Target Start/End: Complemental strand, 42895429 - 42895275
Alignment:
Q  139 catagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatca 237  Q
    |||||| ||| |||| |||| | ||||| ||||||||  |||||||| ||| |||||||| ||||||||||||||||||||||||||| |||||||| ||    
T  42895429 cataggccaaacatataatggcattcctcggttttttgaagtattggattttctaacaacccaaattctagaacaccaacattcaagcactctcacaaca 42895330  T
Q  238 ccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||             |||||| |||||||| |||||||||||||||||||||||||||    
T  42895329 ccattaaacttg-------------aagctcgactttcatgactgttttttcccatattcccaccccc 42895275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 1321829 - 1321901
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||    
T  1321829 catcaccattaaacttggagcttgaagatgaagctcgactttcataacaattttttcccatattcccaccccc 1321901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 33159236 - 33159160
Alignment:
Q  228 tctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||||||||||| |||||||| |||||| ||||||||||||| ||||| ||||||||||||||||    
T  33159236 tctcacatcaccattaaacttggagtttgaagatgaagctcgactttcataactgcttttt-ccatattcccaccccc 33159160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 232 - 312
Target Start/End: Complemental strand, 38881977 - 38881895
Alignment:
Q  232 acatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccac--ccccatcattt 312  Q
    |||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||  |||||||||||    
T  38881977 acatcaccgttaaacttggagcttgaagatgaagctcgactttcataattgttttttcccatattctcacctccccatcattt 38881895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 32823816 - 32823888
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||||| || |||||    
T  32823816 catcaccattaaacttgaagcttgaagataaagctcgactttcataatagttttttcccatatttcccccccc 32823888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 13283396 - 13283516
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||| ||||||| ||||||||||| || || ||||| || ||| | || |||||||||||||||| ||||||||||| |||| ||||||||||| ||    
T  13283396 agggcaaacatagaaagaccttcctgggttattgacagtgtttgttgttcttacaacacaaattctaggacaccaacattgaagctctctcacatcatca 13283495  T
Q  241 ttaaacttggagcttgaagat 261  Q
    ||  || | ||||||||||||    
T  13283496 ttgtacatagagcttgaagat 13283516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 24527388 - 24527316
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||| ||| ||||||||||| |||||| |||||||||||  ||||||| |||||||||||||||    
T  24527388 catcaccattaaatttgaagcttgaagatgaagctcgactttcataacaattttttctcatattcccaccccc 24527316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 11720134 - 11719994
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||  |||| || ||||||  |||||||  ||||||| || ||||||| ||| |||| ||| || ||| |||||||| | | |||||||||||    
T  11720134 gttaaacaaaactttggcagagggcagacatagaaaaaccttcccgggttttttaaagtgttggcttttcttacagcacaaattatgggacaccaacatt 11720035  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||  |||||||||||||||||| | | ||||||||||||    
T  11720034 caagtactctcacatcaccattaagcatagagcttgaagat 11719994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 40019748 - 40019648
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  40019748 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 40019649  T
Q  313 t 313  Q
    |    
T  40019648 t 40019648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 28432810 - 28432711
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| || ||  |||||  || || ||||| |||||||  ||||||||||||||||    
T  28432810 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaaacttgactttggtagctctttttgcccatatgaccacccccatcatttt 28432711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 261
Target Start/End: Complemental strand, 13107490 - 13107372
Alignment:
Q  144 ggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    ||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||| |||| ||||||||||| ||||    
T  13107490 ggcaagcatagaaaggccttcctgggttattgacagtgtttgctgttcttacaacacaaattctaggacaccaacattgaagctctctcacatcatcatt 13107391  T
Q  243 aaacttggagcttgaagat 261  Q
      || | ||||||||||||    
T  13107390 gtacatagagcttgaagat 13107372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 8608946 - 8608806
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| ||   || ||||||||||||||| | ||||||| |||| || ||||| || ||| | || |||||||||||||||| ||||||||  |    
T  8608946 gttaaacaaaccttatgcagagggcaagcatagaaaggccttcctgggttattgacagtgtttgttgttcttacaacacaaattctaggacaccaacgct 8608847  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  8608846 gaagctctctcacatcatcattgtacatagagcttgaagat 8608806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 261
Target Start/End: Original strand, 22273342 - 22273422
Alignment:
Q  181 ttggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  22273342 ttggtttttcttacaacacaaattctaggacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 22273422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 26239417 - 26239277
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctg-gttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||||||||  | ||||||  |||||||   |||| ||| ||| || ||||| |||| ||| || || ||||||||||||| |||||||||||    
T  26239417 gttaaacaaacatttggtagagggcagacatagaaatgcctttctgtgttattgacagtgttggcttttcttactacacaaattctaggacaccaacatt 26239318  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  26239317 gaagctctctcacatcatcattgtacatagagcttgaagat 26239277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 27404856 - 27404788
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  27404856 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 27404788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 38548284 - 38548352
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  38548284 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 38548352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 294
Target Start/End: Original strand, 11790308 - 11790403
Alignment:
Q  199 caaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccata 294  Q
    |||||||||| |||||||||||||||  |||||||||||||||| ||  | |||||||||||| ||   | ||||| ||||| |||||| ||||||    
T  11790308 caaattctaggacaccaacattcaagtactctcacatcaccattcaagatagagcttgaagatgaataccgactttgataaccgtttttgcccata 11790403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 15307704 - 15307772
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||| ||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  15307704 acaacataaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 15307772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 15488073 - 15488141
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||| ||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  15488073 acaacataaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 15488141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 29238607 - 29238674
Alignment:
Q  194 caacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||||| ||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  29238607 caacacatattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 29238674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 41041365 - 41041298
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    ||||| |||| ||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||    
T  41041365 acagtgttggcttttcttacaacacaaattctaggacaccaacattgaagctctctcacctcatcatt 41041298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 42942869 - 42942921
Alignment:
Q  181 ttggttttactaacaacacaaattctagaacaccaacattcaagcgctctcac 233  Q
    |||||||| || |||||||||||| ||| ||||||||||| |||| |||||||    
T  42942869 ttggtttttcttacaacacaaattataggacaccaacattgaagctctctcac 42942921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 70 - 305
Target Start/End: Complemental strand, 33112580 - 33112344
Alignment:
Q  70 ttcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggt 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||| | |     
T  33112580 ttcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacctttggcagagggcaagcatagaatggccttcataga 33112481  T
Q  170 -tttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctc 268  Q
     |||||||| |||||| ||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  33112480 atttttacaatattggattttctaacaacacaaattctaggacaccaacattcaagcactctcacatcaccattaaacttggagtttgaagatgaagctc 33112381  T
Q  269 aactttcataactgttttttcccatattcccaccccc 305  Q
     ||||||||||||||||||||||||||||||||||||    
T  33112380 gactttcataactgttttttcccatattcccaccccc 33112344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 69 - 304
Target Start/End: Complemental strand, 2976164 - 2975929
Alignment:
Q  69 attcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-g 167  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||||| |    
T  2976164 attcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatatataatagttaaacaaacatttggcagagggcaagcatagaatgaccttcctgg 2976065  T
Q  168 gttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagct 267  Q
    ||||| ||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||| ||||||||| |||||    
T  2976064 gttttgtacagtattggcttttctaacaacacaaattctaggacaacaacattcaagcaatctcacatcaccattaaacttggaacttgaagatgaagct 2975965  T
Q  268 caactttcataactgttttttcccatattcccacccc 304  Q
    | ||||| ||||||| |||||||||||||||||||||    
T  2975964 cgactttgataactg-tttttcccatattcccacccc 2975929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 69 - 305
Target Start/End: Original strand, 1847014 - 1847251
Alignment:
Q  69 attcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg 168  Q
    |||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| |||| || ||||||| ||||||||| |||||| |     
T  1847014 attcaaaatcagtcatgtgttgttcaaaccaaaatgacatctcatatttaatagttaaacaaacctttggcagagggcaaacatagaatggccttcccga 1847113  T
Q  169 ttttttac-agtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagct 267  Q
     ||||||  |||||||| ||| ||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  1847114 gtttttattagtattggattttctaacaacacaaattataggacaccaacattcaagctctctcacatcaccattaaacttggagcttgaagatgaagct 1847213  T
Q  268 caactttcataactgttttttcccatattcccaccccc 305  Q
    | ||||||||||||||||||||||||||||||||||||    
T  1847214 cgactttcataactgttttttcccatattcccaccccc 1847251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 138 - 312
Target Start/End: Original strand, 23775072 - 23775248
Alignment:
Q  138 tcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatc 236  Q
    ||||||| |||||||| ||||| |||||||| ||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| |    
T  23775072 tcataggccaagcatacaatgatcttcctgggttttttgaagtattggattttctaacaacacaaattctagaacaccaacattcaagcactctcacaac 23775171  T
Q  237 accattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattccca-cccccatcattt 312  Q
    |||||| ||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  23775172 accattgaacttagagctcgaagatgaagctcgactttcataactgttttttcccatattcccatcccccatcattt 23775248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 139 - 305
Target Start/End: Original strand, 48634793 - 48634960
Alignment:
Q  139 catagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatca 237  Q
    |||||| ||| |||| |||||||||||||| ||||||  |||||||| ||| |||||||||||||||||||||||||| ||||||||| |||||||| ||    
T  48634793 cataggccaaacatataatgaccttcctgggttttttgaagtattggattttctaacaacacaaattctagaacaccagcattcaagcactctcacaaca 48634892  T
Q  238 ccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  48634893 ccattaaacttggagctcgaagatgaagctcgactttcataactgtttttttccatattcccaccccc 48634960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 120 - 312
Target Start/End: Complemental strand, 45897729 - 45897534
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||||||| ||| |||| || | ||||||||||||||| ||||||||  ||||||  |||||||| ||| ||||||||||||||| ||| |||||||||    
T  45897729 tagttaaaccaacctttggcagatggcaagcatagaatggccttcctgaattttttgaagtattggattttctaacaacacaaattgtaggacaccaaca 45897630  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactg-ttttttcccatattcccacccc-catcattt 312  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||  ||||| ||||| | |||||||||||||||||||||| ||||||||    
T  45897629 ttcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgacttttataaccgtttttttcccatattcccaccccacatcattt 45897534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 35862233 - 35862055
Alignment:
Q  117 taatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctg-gttttttacagtattggttttactaacaacacaaattctagaacacca 215  Q
    |||| ||||||||||| |||| | |||||||||||||||| | |||||||| |||||| |||||||||  ||| || | |||||||||| | | ||||||    
T  35862233 taatggttaaacaaacctttggcttagggcaagcatagaaaggccttcctgagtttttgacagtattgacttttcttaaaacacaaattatgggacacca 35862134  T
Q  216 acattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccata 294  Q
    ||| |||| | |||||||||||||||||||| | |||||||||||| ||  |||||||| |||| ||||||| ||||||    
T  35862133 acactcaaacactctcacatcaccattaaacatagagcttgaagatgaaaatcaactttgataattgtttttgcccata 35862055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 237 - 313
Target Start/End: Complemental strand, 31886088 - 31886012
Alignment:
Q  237 accattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    ||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  31886088 accattaaacttggatcttgaagatgaagctcgactttcataactgttttttcccatattcccacccccgtcatttt 31886012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 305
Target Start/End: Complemental strand, 24382293 - 24382217
Alignment:
Q  229 ctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||| ||||||||||| ||||| ||| | |||||||||||| ||||||| ||||||||||||||||    
T  24382293 ctcacatcaccattatacttggagcttcaagatgaagttaaactttcataacagtttttttccatattcccaccccc 24382217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 51685760 - 51685900
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||  ||||||| | ||||||||| || || ||||| |||| ||| || |||||||||||||||| |||||||||||    
T  51685760 gttaaacaaacctttggcagagggcagacatagaaaggccttcctggattattgacagtgttggcttttcttacaacacaaattctaggacaccaacatt 51685859  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  51685860 gaagctctctcacatcatcattgtacatagagcttgaagat 51685900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 33851555 - 33851476
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||| |||||  ||||| ||||||    
T  33851555 catcaccattaaacttggagcttgaagatgaagctcgactttcataacaattttttcccagattccaccccccttcattt 33851476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 124 - 261
Target Start/End: Complemental strand, 27897897 - 27897759
Alignment:
Q  124 taaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattca 222  Q
    ||||||||| |||| || |||||| |||||||| | ||||||||| || || ||||| |||| ||| || |||||||||||||||| ||||||||||| |    
T  27897897 taaacaaacctttggcagagggcaggcatagaaaggccttcctgggttattgacagtgttggcttttcttacaacacaaattctaggacaccaacattga 27897798  T
Q  223 agcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||| ||||||| ||| ||||  || | ||||||||||||    
T  27897797 agctctctcacctcatcattgtacatagagcttgaagat 27897759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 45256058 - 45255977
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataac--tgttttttcccatattcccacccccatcattt 312  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||  | ||||||||||||||| ||||||| ||||||    
T  45256058 catcaccattaaacttggagcttgaaaatgaagctcgactttcataacaattttttttcccatattctcacccccttcattt 45255977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 7884033 - 7883893
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctg-gttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| ||   || ||||||||||||||| |||||||||| ||| || ||||| || | ||| ||  ||||||||||||||| |||||||||||    
T  7884033 gttaaacaaaccttatgcagagggcaagcatagaaagaccttcctgagttattgacagtgtttgcttttcttgcaacacaaattctaggacaccaacatt 7883934  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  7883933 gaagctctctcacatcaacattgtacatagagcttgaagat 7883893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 35904533 - 35904393
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| ||   || ||||||||||||||| | ||||||| |||| || ||||| || | | | || |||||||||||||||| |||||||||||    
T  35904533 gttaaacaaaccttatgcagagggcaagcatagaaaggccttcctgggttattgacagtgtttgctgttcttacaacacaaattctaggacaccaacatt 35904434  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || ||||||||||||||    
T  35904433 gaagctctctcacatcatcattgtacatggagcttgaagat 35904393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 18429314 - 18429243
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc 304  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||||||  ||||||||| ||||| ||||||    
T  18429314 catcaccgttaaacttggagcttgaagatgaagctcgactttcataacaattttttcccttattctcacccc 18429243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 312
Target Start/End: Complemental strand, 26448338 - 26448240
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    |||||||||| | |||||||||||||||||||  |||||||||||| | |||||  ||||| |||||| ||| | ||||||| ||||||| ||||||||    
T  26448338 caacattcaaacactctcacatcaccattaaagatggagcttgaaggtgaagcttgactttgataactctttgtgcccatatgcccaccctcatcattt 26448240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 37886367 - 37886267
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||||| ||||||||    
T  37886367 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacccctcatcattt 37886268  T
Q  313 t 313  Q
    |    
T  37886267 t 37886267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 42281882 - 42282022
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttta-cagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    |||||||||||||||| || ||| ||  ||||||| | ||||| ||| || ||  |||| |||| ||| || |||||||||||||||| |||||||||||    
T  42281882 gttaaacaaacatttggcagaggtcagacatagaaaggccttcttgggttattggcagtgttggcttttcttacaacacaaattctaggacaccaacatt 42281981  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  42281982 gaagctctctcacatcatcattgtacatagagcttgaagat 42282022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 305
Target Start/End: Original strand, 41945600 - 41945691
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||||||    
T  41945600 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccaccccc 41945691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 41978805 - 41978873
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  41978805 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 41978873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 53188412 - 53188344
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  53188412 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 53188344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Complemental strand, 23292224 - 23292138
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||| |||||||| || |||||||||||||||| ||||||||||| ||||  |||||| ||| ||||  || | ||||||||||||    
T  23292224 acagtgttggtttttcttacaacacaaattctaggacaccaacattgaagctttctcacctcatcattgtacatagagcttgaagat 23292138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 24846010 - 24846096
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||| |||| ||| || |||||||||||||||  ||||||||||| |||| |||||| |||||||||  || | ||||||||||||    
T  24846010 acagtgttggcttttcttacaacacaaattctatgacaccaacattgaagcactctcatatcaccattgtacatagagcttgaagat 24846096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 233
Target Start/End: Original strand, 2378326 - 2378435
Alignment:
Q  125 aaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaa 223  Q
    |||||||  |||| || |||||| ||||| || | ||||||||| || || ||||| |||| ||| || |||||||||||||||| ||||||||||| ||    
T  2378326 aaacaaatctttggcagagggcaggcatataaaggccttcctgggttattgacagtgttggcttttcttacaacacaaattctaggacaccaacattgaa 2378425  T
Q  224 gcgctctcac 233  Q
    || |||||||    
T  2378426 gctctctcac 2378435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 261
Target Start/End: Complemental strand, 22218864 - 22218719
Alignment:
Q  117 taatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacacca 215  Q
    |||| ||||||||||| |||| || | |||||| |||||| ||| ||| ||| ||||| | ||| |||  ||| || ||||| || ||| ||| ||||||    
T  22218864 taatggttaaacaaacctttggcagatggcaagaatagaaagacattcttgggtttttgatagtgttgcattttcttacaacgcatattataggacacca 22218765  T
Q  216 acattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||  ||||||||||||||||| || | || |||||||||    
T  22218764 acattcaagtactctcacatcaccattagacatagaacttgaagat 22218719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 48829818 - 48829679
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||   |||||| | ||||| ||| || || ||||| |||| ||| || |||||||||||||||  |||||||||||    
T  48829818 gttaaacaaacctttggcagagggcagatatagaaaggccttcttgggttattgacagtgttggcttttcttacaacacaaattctaagacaccaacatt 48829719  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaaga 260  Q
     |||| || |||||||| ||||  || | |||||||||||    
T  48829718 gaagctctttcacatcatcattgtacatagagcttgaaga 48829679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 274
Target Start/End: Complemental strand, 32843116 - 32842963
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||  || ||||||| ||||||| | ||||||||| ||||  | |||||||  ||| ||  ||  ||||||||| ||||||||| | |    
T  32843116 gttaaacaaacctttagcaaagggcaaacatagaaaggccttcctgggttttagagagtattgtcttttcttgcagtacaaattctggaacaccaatagt 32843017  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagataaagctcaacttt 274  Q
    |||||  ||| ||||||||||||||| |  || |||||||| |||||| |||||    
T  32843016 caagcattctgacatcaccattaaacataaagtttgaagatgaagctcgacttt 32842963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 70 - 312
Target Start/End: Complemental strand, 18183344 - 18183101
Alignment:
Q  70 ttcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-gg 168  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||   | ||    
T  18183344 ttcaaaatcagtcatgtgttgttcaaatcaagatgacatcacatgtttaatagttaaacaaacatttggcagagagcaagcatagaatgacctcgatggg 18183245  T
Q  169 ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctc 268  Q
     ||||||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||| || |||    
T  18183244 atttttacagtattggattttctaacgacacaaattctaggacaccaacattcaagctttctcacatcaccattaaacttggagcttgaagatgaaactc 18183145  T
Q  269 aactttcataactgttttttcccatattcccacccccatcattt 312  Q
     |||||||||||||||||||||||| ||||||||||||||||||    
T  18183144 gactttcataactgttttttcccatgttcccacccccatcattt 18183101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 120 - 313
Target Start/End: Complemental strand, 46637454 - 46637260
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||||||| |||||||| || ||||||||||||||||||||||||||| ||||||  |||||||| ||| ||||||||||||||| ||| |||||||||    
T  46637454 tagttaaaccaacatttggcagagggcaagcatagaatgaccttcctgggttttttgaagtattggattttctaacaacacaaattgtaggacaccaaca 46637355  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcatttt 313  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||  ||||||||||| ||||||| ||||||||||||||| |||||||||    
T  46637354 ttcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgactttcataaccgtttttt-ccatattcccaccccacatcatttt 46637260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 121 - 312
Target Start/End: Original strand, 31803102 - 31803294
Alignment:
Q  121 agttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacat 219  Q
    |||||||| ||| |||| || ||||||| ||||||||| ||||| ||| ||||||  |||||||| ||| ||||||||||||||| ||| ||||||||||    
T  31803102 agttaaaccaacctttggcagagggcaaccatagaatgtccttcatgggttttttgaagtattggattttctaacaacacaaattgtaggacaccaacat 31803201  T
Q  220 tcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    |||||| |||||||| ||| |||||||||||||||||||||| || ||  ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  31803202 tcaagcactctcacaacactattaaacttggagcttgaagatgaaacttgactttcataaccgtttttt-ccatattcccaccccacatcattt 31803294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 122 - 312
Target Start/End: Complemental strand, 42558633 - 42558441
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||||||||||| | |||| || ||||||| | |||||||| ||| ||  || |||||||| | | |||||||||||    
T  42558633 gttaaacaaacctttggcaaagggcaagcatagaaaggcctttctcggtttttgatagtattggattttcttgcaccacaaattatcggacaccaacatt 42558534  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    ||||| |||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||| |||| ||||||  |||||| ||||||||||    
T  42558533 caagcactctcacatcaccattaaacatggagcttgaagatgaagctcaaatttgataactgattttgcccatacgcccaccacccatcattt 42558441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 33679814 - 33679742
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||    
T  33679814 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcctatattcccaccccc 33679742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 42135761 - 42135833
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||    
T  42135761 catcaccattaaacttggagcttgaagatgaagctcgactttcataacaattttttcccatattcccaccccc 42135833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 44158807 - 44158879
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||    
T  44158807 catcaccattaaacttgaagcttgaagatgaagctcgactttcataactattttttcccataatcccaccccc 44158879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 233 - 312
Target Start/End: Complemental strand, 45379658 - 45379579
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    ||||||| ||||||||||||||| ||||| |||||| |||||||||||  ||||||||||||||||||||||| ||||||    
T  45379658 catcaccgttaaacttggagcttaaagatgaagctcgactttcataacaattttttcccatattcccacccccttcattt 45379579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 35478660 - 35478578
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccac-ccccatcattttg 314  Q
    ||||||||||||||||| ||||| ||||| |||||| |||||||||||  ||||||||||||||||||| |||||||||||||    
T  35478660 catcaccattaaacttgaagcttcaagatgaagctcgactttcataacaattttttcccatattcccaccccccatcattttg 35478578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 6576621 - 6576703
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattccca-cccccatcattttg 314  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||||||  |||||||| |||||| ||| ||||||||||||||    
T  6576621 catcaccattaaacttgaagcttgaagatgaagctcgactttcataaaagttttttctcatatttccaccccccatcattttg 6576703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 27088646 - 27088766
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || || || || ||| | || |||||||||||||||| ||||||||||| |||| ||||||||||| ||    
T  27088646 agggcaagcatagaaaggccttcctgggttattgacggtgtttgttgttctcacaacacaaattctaggacaccaacattgaagctctctcacatcatca 27088745  T
Q  241 ttaaacttggagcttgaagat 261  Q
    || ||| | ||||||||||||    
T  27088746 ttgaacatagagcttgaagat 27088766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 238
Target Start/End: Complemental strand, 6817585 - 6817468
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    |||||||||||||||| || ||||||  ||||||| | ||||||||| || || ||||| |||| ||| || |||||||||||||||| |||||||||||    
T  6817585 gttaaacaaacatttggcagagggcagacatagaaaggccttcctgggttattgacagtgttggcttttcttacaacacaaattctaggacaccaacatt 6817486  T
Q  221 caagcgctctcacatcac 238  Q
     |||| ||| ||| ||||    
T  6817485 gaagctctcacacctcac 6817468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 1443559 - 1443679
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||| |||| ||||||||||| ||    
T  1443559 agggcaagcatagaaaggccttcctgggttattgacagtgtttgctcttcttacaacacaaattctaggacaccaacattgaagctctctcacatcatca 1443658  T
Q  241 ttaaacttggagcttgaagat 261  Q
    ||  || | ||||||||||||    
T  1443659 ttgtacatagagcttgaagat 1443679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 9120787 - 9120647
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| ||   || ||||||||||||||| | ||||||| |||| || ||||| || | | | || |||||||||||||||| |||||||||||    
T  9120787 gttaaacaaaccttatgcagagggcaagcatagaaaggccttcctgggttattgacagtgtttgctcttcttacaacacaaattctaggacaccaacatt 9120688  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  9120687 gaagctctctcacatcatcattgtacatagagcttgaagat 9120647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 26224309 - 26224208
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| |  |||||||| || || ||| | || ||||| || |||||||||||||||| ||||||||||| |||| ||||||||||| ||    
T  26224309 agggcaagcatagaaaggtcttcctgggttattgacattgtttgtttttcttacaacacaaattctaggacaccaacattgaagctctctcacatcatca 26224210  T
Q  241 tt 242  Q
    ||    
T  26224209 tt 26224208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 242
Target Start/End: Complemental strand, 33599907 - 33599806
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||| ||||||| ||||||||||| || || | ||| || | ||| || |||||||||||||||| ||||||||||| |||| ||||||||||| ||    
T  33599907 agggcaaacatagaaagaccttcctgggttattgatagtgtttgcttttcttacaacacaaattctaggacaccaacattgaagctctctcacatcatca 33599808  T
Q  241 tt 242  Q
    ||    
T  33599807 tt 33599806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 5784366 - 5784466
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || |||||  ||||||  ||||||| ||||||||    
T  5784366 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgtccatatgaccacccctcatcattt 5784465  T
Q  313 t 313  Q
    |    
T  5784466 t 5784466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 34777204 - 34777136
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  34777204 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 34777136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 52642611 - 52642471
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||  ||||||| | ||||||||| || || || || |||| |||  | |||||| ||||||||| |||||||||||    
T  52642611 gttaaacaaacctttggcagagggcagacatagaaaggccttcctgggttattgacggtgttggctttttttacaacataaattctaggacaccaacatt 52642512  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  52642511 gaagctctctcacatcatcattgtacatagagcttgaagat 52642471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 11153136 - 11153037
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    ||||| ||||||  ||||||||||||||||||| |||||  ||||||| ||| |  ||||| ||| || ||||| |||||||  ||||||||||||||||    
T  11153136 caacactcaagcattctcacatcaccattaaacatggaggatgaagatgaagtttgactttgatagctctttttgcccatatgaccacccccatcatttt 11153037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 3012502 - 3012450
Alignment:
Q  181 ttggttttactaacaacacaaattctagaacaccaacattcaagcgctctcac 233  Q
    |||||||| || |||||||||||||||| ||||||||||| |||| |||||||    
T  3012502 ttggtttttcttacaacacaaattctaggacaccaacattgaagctctctcac 3012450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 4855033 - 4854965
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||| ||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  4855033 acaacacaaattttaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 4854965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 31237526 - 31237414
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||  ||||||| | ||||||||| || || ||||| |||  ||| || |||||||||||||||| ||| |||||||    
T  31237526 gttaaacaaacctttggcagagggcagacatagaaaggccttcctggattattgacagtcttgacttttcttacaacacaaattctaggacagcaacatt 31237427  T
Q  221 caagcgctctcac 233  Q
     |||| |||||||    
T  31237426 gaagctctctcac 31237414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 47012115 - 47012047
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||||||| |||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  47012115 acaacacaatttctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 47012047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 230
Target Start/End: Complemental strand, 51895220 - 51895165
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctct 230  Q
    ||||| |||||||| || |||||||||||||||| ||||||||||| |||| ||||    
T  51895220 acagtgttggtttttcttacaacacaaattctaggacaccaacattgaagctctct 51895165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 50554815 - 50554775
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcac 233  Q
    |||||||||||||||| ||||||||||| |||| |||||||    
T  50554815 acaacacaaattctaggacaccaacattgaagctctctcac 50554775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 7e-83; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 70 - 312
Target Start/End: Complemental strand, 35291781 - 35291540
Alignment:
Q  70 ttcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggt 169  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||| ||||| |||     
T  35291781 ttcaaaatcagtcatgtgttgttcaaactaagatgacatcacatgtttaatagttaaacaaacctttgg-agagggcaagcatagaatggccttcatggg 35291683  T
Q  170 -tttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctc 268  Q
     |||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||| || ||     
T  35291682 atttttacagtattgatttt-ctaacgacacaaattctaggacaccaacattcaagcactatcacatcaccattaaacttggagcttgaagatgaaactt 35291584  T
Q  269 aactttcataactgttttttcccatattcccacccccatcattt 312  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  35291583 gactttcataactgttttttcccatattcccacccccatcattt 35291540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 305
Target Start/End: Complemental strand, 43317466 - 43317232
Alignment:
Q  70 ttcaaaatcagtcatgtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggt 169  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  | ||||||||||||||||| ||||| |||     
T  43317466 ttcaaaatcagtcatgtgttgttcaaactaagatgacatcacatgtttaatagttaaacaaacctttgg-agagggcaagcatagaatggccttcatggg 43317368  T
Q  170 -tttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctc 268  Q
     ||||||| |||||| |||| ||||   |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||    
T  43317367 atttttacggtattgatttt-ctaatgtcacatattctaggacaccaacattcaagcactctcacatcaccattaaacttggagtttgaagatgaagctc 43317269  T
Q  269 aactttcataactgttttttcccatattcccaccccc 305  Q
     ||||||||||||||||||| ||||||||||||||||    
T  43317268 gactttcataactgtttttttccatattcccaccccc 43317232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 139 - 312
Target Start/End: Complemental strand, 32836546 - 32836372
Alignment:
Q  139 catagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatca 237  Q
    |||||| |||||||| |||| ||||||||| ||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  32836546 cataggccaagcatataatggccttcctgggttttttgaagtattggattttctaacaacacaaattctagaacaccaacattcaagcactctcacaaca 32836447  T
Q  238 ccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    ||||||||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  32836446 ccattaaacttggagctcgaagatgaagctcgactttcataactgttttttcacatattcccacccccatcattt 32836372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 120 - 312
Target Start/End: Complemental strand, 18727253 - 18727059
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||||||| ||| |||| || ||||||||||||||| | ||||||||| ||||||  |||||||| ||| ||||||||||||||| ||| |||||||||    
T  18727253 tagttaaaccaacctttggcagagggcaagcatagaacggccttcctggattttttgaagtattggattttctaacaacacaaattgtaggacaccaaca 18727154  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||| ||||||||||||| ||||||||    
T  18727153 ttcaagcactctcacaacaccattaaacttggagcttgaagatgaagctttactttcataaccgttttttcctatattcccaccccacatcattt 18727059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 120 - 315
Target Start/End: Original strand, 32089329 - 32089519
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggttttttacagtattggttttactaacaacacaaattctagaacaccaacat 219  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||||| | |||||      |||| ||| ||||||||||||||| ||| ||||||||||    
T  32089329 tagttaaaccaacctttggcagagggcaagcatagaatgaccttcctaggttttt------ttggattttctaacaacacaaattgtaggacaccaacat 32089422  T
Q  220 tcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattttga 315  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||  ||||||||||| ||||||||||||||||||||||| |||||||||||    
T  32089423 tcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgactttcataaccgttttttcccatattcccaccccacatcattttga 32089519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 40329963 - 40330101
Alignment:
Q  167 ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagc 266  Q
    ||||||||  |||||||| |||  |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  |||||||| ||||    
T  40329963 ggttttttgaagtattggattttttaacaacacaaattctaggacaccaacattcaagcactctcacatcaccattaaacttggaaattgaagatgaagc 40330062  T
Q  267 tcaactttcataactgttttttcccatattcccaccccc 305  Q
    || |||||||||||| |||||||||||||| ||||||||    
T  40330063 tcgactttcataactattttttcccatatttccaccccc 40330101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 305
Target Start/End: Complemental strand, 38177296 - 38177136
Alignment:
Q  146 caagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaa 244  Q
    |||||||| |||| |||||| || ||||||  |||||||| ||| |||||| ||||||||||| |||||| |||||||||| |||||||| |||||||||    
T  38177296 caagcatataatggccttcccgggttttttgaagtattggattttctaacagcacaaattctaaaacaccgacattcaagcactctcacaacaccattaa 38177197  T
Q  245 acttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    |||||||||| |||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  38177196 acttggagctcgaagatgaagctcgactttcataactattttttcccatatttccaccccc 38177136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 146 - 305
Target Start/End: Complemental strand, 38204520 - 38204360
Alignment:
Q  146 caagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaa 244  Q
    |||||||| |||| |||||| || ||||||  |||||||| ||| |||||| ||||||||||| |||||| |||||||||| |||||||| |||||||||    
T  38204520 caagcatataatggccttcccgggttttttgaagtattggattttctaacagcacaaattctaaaacaccgacattcaagcactctcacaacaccattaa 38204421  T
Q  245 acttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    |||||||||| |||||| |||||| |||||||||||| |||||||||||||| ||||||||    
T  38204420 acttggagctcgaagatgaagctcgactttcataactattttttcccatatttccaccccc 38204360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 120 - 312
Target Start/End: Original strand, 33257173 - 33257354
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||||||| ||| |||| || ||||||||||||||||| ||||||| | ||||||  |||||||| ||| |||| |||||||||| ||| |||||||||    
T  33257173 tagttaaaccaacctttggcagagggcaagcatagaatggccttcctagattttttgaagtattggattttctaataacacaaattgtaggacaccaaca 33257272  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    ||||||| |||||||| ||||||||||||||||||||||             |||||||||| ||||||||||||||||||||||| ||||||||    
T  33257273 ttcaagcactctcacaacaccattaaacttggagcttga-------------ctttcataaccgttttttcccatattcccaccccacatcattt 33257354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 35400145 - 35400295
Alignment:
Q  145 gcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatta 243  Q
    |||||||||||||| ||||||||| ||||||  |||||||| ||| ||||||||||||||| ||| |||||||||||           ||| ||||||||    
T  35400145 gcaagcatagaatggccttcctgggttttttgaagtattggattttctaacaacacaaattgtaggacaccaacatt-----------acaacaccatta 35400233  T
Q  244 aacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||| |||||||| || ||  ||||||| |||  |||||||||||||||||||||||    
T  35400234 aacttggagtttgaagatgaaacttgactttcaaaacctttttttcccatattcccaccccc 35400295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 242
Target Start/End: Original strand, 2181111 - 2181232
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctg-gttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || |||||| |||||||| | |||||||| ||| || ||||| |||| ||| || |||||||||||||||| |||||||||||    
T  2181111 gttaaacaaacctttggcagagggcaggcatagaaaggccttcctgcgttattgacagtgttggcttttcttacaacacaaattctaggacaccaacatt 2181210  T
Q  221 caagcgctctcacatcaccatt 242  Q
     |||| ||||||| ||| ||||    
T  2181211 gaagctctctcacctcatcatt 2181232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 21842362 - 21842482
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| ||||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||| |||| ||||||||||| ||    
T  21842362 agggcaagcatagaaagaccttcctgggttattgacagtgttagctattcttacaacacaaattctaggacaccaacattgaagctctctcacatcatca 21842461  T
Q  241 ttaaacttggagcttgaagat 261  Q
    ||  || | ||||||||||||    
T  21842462 ttgtacatagagcttgaagat 21842482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 17575295 - 17575418
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||  |||| ||||||||||| ||    
T  17575295 agggcaagcatagaaaggccttcctgggttattgacagtgtttgctgttcttacaacacaaattctaggacaccaacatggaagctctctcacatcatca 17575394  T
Q  241 ttaaacttggagcttgaagataaa 264  Q
    ||  || | |||||||||||||||    
T  17575395 ttgtacatagagcttgaagataaa 17575418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 17576015 - 17576138
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||  |||| ||||||||||| ||    
T  17576015 agggcaagcatagaaaggccttcctgggttattgacagtgtttgctgttcttacaacacaaattctaggacaccaacatggaagctctctcacatcatca 17576114  T
Q  241 ttaaacttggagcttgaagataaa 264  Q
    ||  || | |||||||||||||||    
T  17576115 ttgtacatagagcttgaagataaa 17576138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 264
Target Start/End: Original strand, 17577326 - 17577449
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||  |||| ||||||||||| ||    
T  17577326 agggcaagcatagaaaggccttcctgggttattgacagtgtttgctgttcttacaacacaaattctaggacaccaacatggaagctctctcacatcatca 17577425  T
Q  241 ttaaacttggagcttgaagataaa 264  Q
    ||  || | |||||||||||||||    
T  17577426 ttgtacatagagcttgaagataaa 17577449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 41494487 - 41494420
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    ||||| |||||||| || |||||||||||||||  ||||||||||| |||| ||||||||||||||||    
T  41494487 acagtgttggtttttcttacaacacaaattctatgacaccaacattgaagcactctcacatcaccatt 41494420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 29620866 - 29620746
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||| || | ||||||||||| ||    
T  29620866 agggcaagcatagaaaggccttcctgggttattgacagtgtttgctcttcttacaacacaaattctaggacaccaacattgaaactctctcacatcatca 29620767  T
Q  241 ttaaacttggagcttgaagat 261  Q
    ||  || | ||||||||||||    
T  29620766 ttgtacatagagcttgaagat 29620746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 40781641 - 40781709
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  40781641 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 40781709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 42472195 - 42472127
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  42472195 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 42472127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 294
Target Start/End: Original strand, 18341578 - 18341679
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttccca 292  Q
    |||||| ||||| | | ||||||||||||||||  ||| |||||||| |||||| | ||| |||| ||| |||||||| ||| | |||||||||| ||||    
T  18341578 acaacaaaaattatgggacaccaacattcaagcattcttacatcaccgttaaacatagagtttgaggatgaagctcaagtttgagaactgtttttgccca 18341677  T
Q  293 ta 294  Q
    ||    
T  18341678 ta 18341679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 294
Target Start/End: Complemental strand, 28036086 - 28035985
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttccca 292  Q
    |||||||||||||||| ||||| ||| ||||||  ||| |||| |||| ||| | | ||||||||||||||| ||| | ||| | ||| |||||||||||    
T  28036086 acaacacaaattctaggacaccgacactcaagcattctaacattaccaataagcatagagcttgaagataaaactcgaatttgagaacagttttttccca 28035987  T
Q  293 ta 294  Q
    ||    
T  28035986 ta 28035985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 42619875 - 42619822
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagct 267  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||    
T  42619875 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagct 42619822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 27076959 - 27077010
Alignment:
Q  210 acaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||  |||||||||||||||||||  | ||||||||||||    
T  27076959 acaccaacattcaagtactctcacatcaccattaaaaatagagcttgaagat 27077010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 34328267 - 34328334
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    ||||| |||| ||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||    
T  34328267 acagtgttggcttttcttacaacacaaattctaggacaccaacattgaagctctctcacctcatcatt 34328334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 7268857 - 7268976
Alignment:
Q  142 agggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||| |||| || ||||| || ||| | || ||||| |||||| ||| ||| ||||||| |||| ||||||||||| ||    
T  7268857 agggcaagcatagaagggccttcctaggttattgacagtgtttgttgttcttacaac-caaattataggacatcaacattgaagctctctcacatcatca 7268955  T
Q  241 ttaaacttggagcttgaagat 261  Q
    ||  || | ||||||||||||    
T  7268956 ttgtacatagagcttgaagat 7268976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 18624080 - 18624012
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||| ||| ||||||||||| |||| ||||||||||  ||||| || | | ||||||||||    
T  18624080 acaacacaaattataggacaccaacattgaagctctctcacatcttcattatacatagggcttgaagat 18624012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 150 - 312
Target Start/End: Original strand, 38614268 - 38614431
Alignment:
Q  150 catagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaactt 248  Q
    ||||||||||||||||||| ||||||  |||||||| ||| ||||||||||||||||||| ||||||||||| |||| ||||||||||||||||| ||||    
T  38614268 catagaatgaccttcctgggttttttgaagtattggattttctaacaacacaaattctaggacaccaacatttaagcactctcacatcaccattagactt 38614367  T
Q  249 ggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38614368 ggagcttgaagatgaagctcgactttcataactgttttttcccatattcccacccccatcattt 38614431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 85 - 288
Target Start/End: Original strand, 11683933 - 11684137
Alignment:
Q  85 gtgttgttcaaaccaagatgacatcacatgtttaatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggttttttac-agtattg 183  Q
    |||||| |||||||| ||||||||||||| |||||||||||||||||| |||| || ||||||||||||||| ||||||| ||| ||||||  |||||||    
T  11683933 gtgttgatcaaaccaggatgacatcacatctttaatagttaaacaaacctttggcagagggcaagcatagaaagaccttcttggatttttaagagtattg 11684032  T
Q  184 gttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgt 283  Q
    ||||| || |||||||||||||||| |||||||||||||||  |||||||||||||||||||| |||||||| ||||| |||||| |||||||||| ||     
T  11684033 gtttttcttacaacacaaattctaggacaccaacattcaagtactctcacatcaccattaaacatggagcttaaagatgaagctcgactttcataattgc 11684132  T
Q  284 ttttt 288  Q
    |||||    
T  11684133 ttttt 11684137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 142 - 313
Target Start/End: Original strand, 2168276 - 2168450
Alignment:
Q  142 agggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||||| ||||||| ||||||||  |||||||| ||| ||| ||||||||||||||| |||||||||||  ||| |||| |||||||||    
T  2168276 agggcaagcatagaatggccttcctaggttttttgaagtattggattttctatcaacacaaattctaggacaccaacatttgagcactctgacatcacca 2168375  T
Q  241 ttaaacttggagcttgaagataaagctcaactttcataac--tgttttttcccatattcccacccccatcatttt 313  Q
    |||||||||||||||||||||||||||| |||||||||||  | |||||||||||||||||||||||||||||||    
T  2168376 ttaaacttggagcttgaagataaagctcgactttcataactattttttttcccatattcccacccccatcatttt 2168450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 312
Target Start/End: Original strand, 23954727 - 23954898
Alignment:
Q  142 agggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||||| ||||||||| ||||||  |||||||| ||| ||||||||||||||||||| |||||||||||||||| |||| ||| |||||    
T  23954727 agggcaagcatagaatggccttcctgggttttttgaagtattggattttctaacaacacaaattctaggacaccaacattcaagcactctaacaacacca 23954826  T
Q  241 ttaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    |||||||||||||| |||||| |||||| | ||||||||||||||||| |||||||| ||||||| ||||||    
T  23954827 ttaaacttggagctcgaagatgaagctcgattttcataactgtttttttccatattctcacccccgtcattt 23954898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 120 - 312
Target Start/End: Complemental strand, 46995350 - 46995157
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||||||| ||| |||| || | ||||||||||||||| ||||| ||| ||||||  |||||||| ||| ||||||||||||||| ||| |||||||||    
T  46995350 tagttaaaccaacctttggcagatggcaagcatagaatggccttcatgggttttttgaagtattggattttctaacaacacaaattgtaggacaccaaca 46995251  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||  ||||||||||| ||| ||| ||||||||||||||| ||||||||    
T  46995250 ttcaagcactctcacaacaccattaaacttggagcttgaagatgaagcttgactttcataaccgttattt-ccatattcccaccccacatcattt 46995157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 36756398 - 36756480
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattccca-cccccatcattttg 314  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  36756398 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcccatattcccaccccccatcattttg 36756480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 36762195 - 36762277
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattccca-cccccatcattttg 314  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  36762195 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcccatattcccaccccccatcattttg 36762277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 122 - 313
Target Start/End: Original strand, 34692157 - 34692349
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||||||||||| |||||| |||| ||||| | ||| |||| ||| || ||| |||||||||||  |||||||||||    
T  34692157 gttaaacaaacctttggcagagggcaagcatagaaagacctttctgggtttttgagagtgttggcttttcttacagcacaaattctaccacaccaacatt 34692256  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    |||||  ||||||||||| ||||||| || ||  ||||||| |||||  ||||| ||| || ||||| |||||||  | ||||||||||||||    
T  34692257 caagcattctcacatcactattaaacatgtaggatgaagatgaagcttgactttgatagctctttttgcccatatgactacccccatcatttt 34692349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 46811277 - 46811197
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    ||||||||||||||||| ||||||||||| |||||| ||||||| ||| ||||||||||||||||||||||||||||||||    
T  46811277 catcaccattaaacttgaagcttgaagatgaagctcgactttcagaacagttttttcccatattcccacccccatcatttt 46811197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 40785079 - 40785165
Alignment:
Q  228 tctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattccca-cccccatcatttt 313  Q
    |||||||||||||||||||||||||||||||||  |||||| |||||||||| |||||||| ||||||||||| |||||||||||||    
T  40785079 tctcacatcaccattaaacttggagcttgaagaagaagctcgactttcataattgtttttttccatattcccaccccccatcatttt 40785165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 122 - 265
Target Start/End: Complemental strand, 38550229 - 38550085
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    |||||||||||||||| ||  |||||| ||||||| | ||||||||| || || ||||| |||| ||| || |||||||||||||||| |||||||||||    
T  38550229 gttaaacaaacatttggcagtgggcaaacatagaaaggccttcctgggttattgacagtgttggcttttcttacaacacaaattctaggacaccaacatt 38550130  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagataaag 265  Q
     |||| ||||||||||| ||||  || | ||||||||||||||||    
T  38550129 gaagctctctcacatcatcattgtacatagagcttgaagataaag 38550085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 313
Target Start/End: Complemental strand, 47340540 - 47340459
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataac-tgttttttcccatattcccacccccatcatttt 313  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||   ||||||||||||||||||||||| |||||||    
T  47340540 catcaccattaaacttggagtttgaagatgaagctcaactttcataacaatttttttcccatattcccacccccttcatttt 47340459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 48851255 - 48851134
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||| |||||||||| || ||||||||||||||| | ||||||| |||| || ||||| |||| ||| || |||||||||||||||  |||||||||||    
T  48851255 gttaaccaaacatttggcagagggcaagcatagaaaggccttcctaggttattgacagtgttggcttttcttacaacacaaattctatgacaccaacatt 48851156  T
Q  221 caagcgctctcacatcaccatt 242  Q
     |||| ||||||||||| ||||    
T  48851155 gaagctctctcacatcatcatt 48851134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 3690725 - 3690654
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc 304  Q
    |||||||| |||||||||||||||||||| |||||  |||||||||||  ||||||||||||||||||||||    
T  3690725 catcaccactaaacttggagcttgaagatgaagcttgactttcataacaattttttcccatattcccacccc 3690654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 4321673 - 4321574
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    |||||||||||| ||||||||||| |||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||||||||||||||    
T  4321673 caacattcaagcactctcacatcaacattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacccccatcatttt 4321574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 268
Target Start/End: Original strand, 32840810 - 32840953
Alignment:
Q  123 ttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggttttttacagtattggttttactaacaacacaaattctagaacaccaacattca 222  Q
    |||||||||| |||| || || |||| ||||||| | || || |||||||||| |||||||| ||| || |||||||||||| | | |||||||||||||    
T  32840810 ttaaacaaacctttggcaaagtgcaaacatagaaaggccatcttggttttttagagtattggcttttcttacaacacaaattat-ggacaccaacattca 32840908  T
Q  223 agcgctctcacatcaccattaaacttggagcttgaagataaagctc 268  Q
    |||  | | ||||||||| | ||  |||||||||||||||||||||    
T  32840909 agcattttaacatcaccaat-aaggtggagcttgaagataaagctc 32840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 20479080 - 20479200
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||| |||| ||||||||||| ||    
T  20479080 agggcaagcatagaaaggccttcctgggttattgacagtgtttgctcttcttacaacacaaattctaggacaccaacattgaagctctctcacatcatca 20479179  T
Q  241 ttaaacttggagcttgaagat 261  Q
    ||  || | ||||||||||||    
T  20479180 ttgtacatagagcttgaagat 20479200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 45464683 - 45464783
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  45464683 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 45464782  T
Q  313 t 313  Q
    |    
T  45464783 t 45464783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 47384971 - 47384851
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||| ||||||| | ||||||||| || || ||| | |||||||| || |||||||||||||||| ||||||||||| || | ||||||||||| ||    
T  47384971 agggcaaacatagaaaggccttcctgggttattgacaatgttggtttttcttacaacacaaattctaggacaccaacattgaatctctctcacatcatca 47384872  T
Q  241 ttaaacttggagcttgaagat 261  Q
    || |||   ||||||||||||    
T  47384871 ttgaacagagagcttgaagat 47384851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 77469 - 77537
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  77469 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 77537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 30109185 - 30109085
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| |||  | ||||| |||||||  ||||| ||||||||||    
T  30109185 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagttctttttgcccatatgaccacctcccatcattt 30109086  T
Q  313 t 313  Q
    |    
T  30109085 t 30109085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 33037988 - 33038037
Alignment:
Q  263 aagctcaactttcataactgttttttcccatattccc-acccccatcattt 312  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  33037988 aagctcaactttcataactg-tttttcccatattcccaacccccatcattt 33038037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 242
Target Start/End: Complemental strand, 37114577 - 37114516
Alignment:
Q  181 ttggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    |||||||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||    
T  37114577 ttggtttttcttacaacacaaattctaggacaccaacattgaagctctctcacctcatcatt 37114516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 45360748 - 45360816
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  45360748 acaacacaaattctaggacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 45360816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 48302744 - 48302652
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccca 306  Q
    |||||||||||| |||||||||||||||||||| ||||   ||||||| || ||  ||||| ||| || ||||| |||||||  |||||||||    
T  48302744 caacattcaagcactctcacatcaccattaaacatggaagatgaagatgaaacttgactttgatagctctttttgcccatatgaccaccccca 48302652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 48311337 - 48311399
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatca 237  Q
    ||||| |||| ||| || |||||||||| ||||  |||||||||||||||| |||||||||||    
T  48311337 acagtgttggcttttcttacaacacaaaatctattacaccaacattcaagcactctcacatca 48311399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 22155268 - 22155380
Alignment:
Q  150 catagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaactt 248  Q
    ||||||| | ||||||| |||| || ||||| |||| ||| || |||||||||||||||| ||||||||||| |||   |||||| ||| ||||  || |    
T  22155268 catagaaaggccttcctaggttattgacagtgttggcttttcttacaacacaaattctaggacaccaacattgaagttatctcacctcatcattgtacat 22155367  T
Q  249 ggagcttgaagat 261  Q
     ||||||||||||    
T  22155368 agagcttgaagat 22155380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 261
Target Start/End: Original strand, 22211183 - 22211295
Alignment:
Q  150 catagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaactt 248  Q
    ||||||| | ||||||| |||| || ||||| |||| ||| || |||||||||||||||| ||||||||||| |||   |||||| ||| ||||  || |    
T  22211183 catagaaaggccttcctaggttattgacagtgttggcttttcttacaacacaaattctaggacaccaacattgaagttatctcacctcatcattgtacat 22211282  T
Q  249 ggagcttgaagat 261  Q
     ||||||||||||    
T  22211283 agagcttgaagat 22211295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 34775675 - 34775607
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||||||||||||||  |||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  34775675 acaacacaaattctaggccaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 34775607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 46438271 - 46438203
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||| ||| ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  46438271 acaacacaaattataggacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 46438203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 142 - 312
Target Start/End: Original strand, 4519892 - 4520063
Alignment:
Q  142 agggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||||||||||||||| ||||||  |||||||| | | ||||||||||||||||||| |||||||||||||||| || | |||||||||    
T  4519892 agggcaagcatagaatgaccttcctgggttttttgaagtattggatcttctaacaacacaaattctaggacaccaacattcaagcactttgacatcacca 4519991  T
Q  241 ttaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  4519992 ttaaacttggagcttgaagatgaagctcgactttcataactgttttttcccatatttccacccccatcattt 4520063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 51041314 - 51041238
Alignment:
Q  228 tctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc 304  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||    
T  51041314 tctcacatcaccattaaacttggagcttgaagatgaaactcgactttcataactgttttttcccatattcccacccc 51041238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 44557183 - 44557101
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattttg 314  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||| ||||||||||    
T  44557183 catcaccattaaacttggagctagaagatgaagctcgactttcataacagttttttcccatattcccacccctcatcattttg 44557101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 27626246 - 27626327
Alignment:
Q  234 atcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattccca-cccccatcattttg 314  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| ||||||| ||||||||||| ||||||||||||||    
T  27626246 atcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttgccatattcccaccccccatcattttg 27626327  T

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Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 54387284 - 54387424
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    |||||||||||||||| |||||||||  ||||||| |  |||||||| || || ||||| |||| ||| || |||||||||||||||| |||||||||||    
T  54387284 gttaaacaaacatttggcatagggcagacatagaaaggtcttcctgggttattgacagtgttggcttttcttacaacacaaattctaggacaccaacatt 54387383  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| |||||||||||  |||| || | ||||||||||||    
T  54387384 gaagctctctcacatcattattatacatagagcttgaagat 54387424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 117 - 312
Target Start/End: Complemental strand, 28101271 - 28101075
Alignment:
Q  117 taatagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacacca 215  Q
    |||| ||||||||||| |||| || ||||||| |||||||  |||||||||| ||||| | |||| ||| |||  | ||| |||||||||| | ||||||    
T  28101271 taatggttaaacaaacttttggcagagggcaaacatagaaataccttcctggatttttgatagtagtggctttttttacatcacaaattctgggacacca 28101172  T
Q  216 acattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    | |||||||| | ||||||||||||||| || | |||||||||||| ||| ||  |||| |||||| ||||| || |||| ||  | ||||||||||    
T  28101171 atattcaagcaccctcacatcaccattatacatagagcttgaagatgaagatcgtctttgataactatttttgcctatatgccaccacccatcattt 28101075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 35997284 - 35997349
Alignment:
Q  240 attaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    |||||||||| ||||||||||| |||||| |||||| |||| ||||||||||||||||||||||||    
T  35997284 attaaacttgcagcttgaagatgaagctcgactttcttaacagttttttcccatattcccaccccc 35997349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 48645715 - 48645594
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttta-cagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||  ||||||| ||||||||||| || ||  |||| |||| ||| || |||||||||||||||| |||||||||||    
T  48645715 gttaaacaaacttttggcagagggcagacatagaaagaccttcctgggttattggcagtgttggcttttcttacaacacaaattctaggacaccaacatt 48645616  T
Q  221 caagcgctctcacatcaccatt 242  Q
     |||| ||||||||||| ||||    
T  48645615 gaagctctctcacatcatcatt 48645594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 39084651 - 39084751
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  39084651 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 39084750  T
Q  313 t 313  Q
    |    
T  39084751 t 39084751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 39190318 - 39190418
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  39190318 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 39190417  T
Q  313 t 313  Q
    |    
T  39190418 t 39190418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 2349329 - 2349254
Alignment:
Q  237 accattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcattt 312  Q
    ||||||||||||| ||||||||||| ||||||   |||| |||| |||| ||||||||||||||||||| ||||||    
T  2349329 accattaaacttgcagcttgaagatgaagctcgcttttcttaacagtttattcccatattcccacccccgtcattt 2349254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 123 - 260
Target Start/End: Original strand, 27385854 - 27385992
Alignment:
Q  123 ttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattc 221  Q
    |||||||||| ||||  | ||||||| ||||||| ||||||| | ||||||| ||| |||||| ||| || | | || ||||| | | ||||||||||||    
T  27385854 ttaaacaaacctttgatagagggcaaacatagaaagaccttcttaggtttttgacattattggcttttcttagagcataaattatgggacaccaacattc 27385953  T
Q  222 aagcgctctcacatcaccattaaacttggagcttgaaga 260  Q
    |||  |||||||||||||||||||| |  ||||||||||    
T  27385954 aagtactctcacatcaccattaaacataaagcttgaaga 27385992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 833869 - 833801
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  833869 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 833801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 5439090 - 5439158
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  5439090 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 5439158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 39922506 - 39922606
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| ||  |||| |||||||  ||||| ||||||||||    
T  39922506 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctccttttgcccatatgaccacctcccatcattt 39922605  T
Q  313 t 313  Q
    |    
T  39922606 t 39922606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 42879876 - 42879776
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||| | |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  42879876 caacattcaatcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 42879777  T
Q  313 t 313  Q
    |    
T  42879776 t 42879776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 43778979 - 43778879
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| ||  |||| |||||||  ||||| ||||||||||    
T  43778979 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctccttttgcccatatgaccacctcccatcattt 43778880  T
Q  313 t 313  Q
    |    
T  43778879 t 43778879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 32653130 - 32653229
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    |||||||| ||| |||||||||||||||||||| || ||  ||||||| |||||  ||||| ||| || ||||| |||||||  |||||||| |||||||    
T  32653130 caacattcgagcactctcacatcaccattaaacatgaaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacccccttcatttt 32653229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 312
Target Start/End: Original strand, 10544498 - 10544596
Alignment:
Q  215 aacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    ||||||||| |  ||| ||||||||||||||| | |||||||||||| ||| || ||||| | |||||||||| ||||||  |||||| ||||||||||    
T  10544498 aacattcaaacattctgacatcaccattaaacatagagcttgaagatgaagttcgactttgagaactgtttttgcccatacgcccaccacccatcattt 10544596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 5485551 - 5485632
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatat 295  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||  |||||  ||||| ||| || ||||| |||||||    
T  5485551 caacattcaagcactctcacatcaccattaaacatggaggatgaagacgaagcttgactttgatagctctttttgcccatat 5485632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 51013339 - 51013407
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| |||| |||||| ||||  || | ||||||||||||    
T  51013339 acaacacaaattctaggacaccaacattgaagctctcttacatcatcattgtacatagagcttgaagat 51013407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 11254711 - 11254644
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    ||||| |||| ||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||    
T  11254711 acagtgttggcttttcttacaacacaaattctaggacaccaacattgaagctctctcacctcatcatt 11254644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 242
Target Start/End: Complemental strand, 41760380 - 41760313
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    ||||| |||| ||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||    
T  41760380 acagtgttggattttcttacaacacaaattctaggacaccaacattgaagctctctcacctcatcatt 41760313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 313
Target Start/End: Complemental strand, 44993399 - 44993300
Alignment:
Q  215 aacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcatttt 313  Q
    ||||||||||| || ||||||||||||||||| |||||  ||||||| || ||  ||||| ||| || ||||| |||||||  ||||| |||||||||||    
T  44993399 aacattcaagcactttcacatcaccattaaacatggaggatgaagatgaaacttgactttgatagctctttttgcccatatgaccacctcccatcatttt 44993300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 42981939 - 42982025
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||| |||| ||| || |||| ||||||||||| ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  42981939 acagtgttggctttccttacaaaacaaattctaggacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 42982025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 7e-43; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 139 - 305
Target Start/End: Original strand, 37418187 - 37418355
Alignment:
Q  139 catagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatca 237  Q
    |||||| ||| |||| |||| ||||||| ||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||| ||    
T  37418187 cataggccaaacatataatggccttcctcggttttttgaagtattggattttctaacaacacaaattctagaacaccaacattcaagcactctcacaaca 37418286  T
Q  238 ccattaaacttggagcttgaagataaagctcaactttcataactg-ttttttcccatattcccaccccc 305  Q
    |||||||||||| |||| |||||| || ||| ||||||||||||| |||||| ||||||||||||||||    
T  37418287 ccattaaacttgaagctcgaagatgaaactcgactttcataactgttttttttccatattcccaccccc 37418355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 120 - 301
Target Start/End: Complemental strand, 35970 - 35789
Alignment:
Q  120 tagttaaacaaacatttgtcatagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaaca 218  Q
    ||||||||| ||| |||| || |||||||||||| |||| ||||||||| ||||||  || ||||  ||  ||||||||||||||| ||| |||||||||    
T  35970 tagttaaaccaacctttggcagagggcaagcataaaatggccttcctgggttttttgaagaattgaattatctaacaacacaaattgtaggacaccaaca 35871  T
Q  219 ttcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccac 301  Q
    ||||||| |||||||| |||||||||||||||||||||||||| || || |||||||||||| ||||||| ||||||||||||    
T  35870 ttcaagcactctcacaacaccattaaacttggagcttgaagatgaaacttaactttcataaccgtttttt-ccatattcccac 35789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 305
Target Start/End: Original strand, 42880233 - 42880398
Alignment:
Q  139 catagggcaagcatagaatgaccttcctgg-ttttttacagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatca 237  Q
    |||||| |||||||| |||| ||||| ||| ||||||  ||||| || ||| |||||||||||||||||||||||||||||||||||| ||| ||   ||    
T  42880233 cataggccaagcatataatggccttcttgggttttttgaagtatcggattttctaacaacacaaattctagaacaccaacattcaagcactcgcaa--ca 42880330  T
Q  238 ccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||| |||||  ||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  42880331 ccattaaacttagagctcaaagatgaagctcgactttcataactgttttttcccatattcccaacccc 42880398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 42002990 - 42003062
Alignment:
Q  233 catcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||    
T  42002990 catcaccattaaacttggagcttgaagatgaagctcgactttcataacagttttttcccatattcccaccccc 42003062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 227 - 309
Target Start/End: Complemental strand, 11313400 - 11313318
Alignment:
Q  227 ctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatca 309  Q
    |||||||||||||||||||| ||||||||||||||||||||  ||||| || ||| ||||| ||||||| |||||||||||||    
T  11313400 ctctcacatcaccattaaacatggagcttgaagataaagcttgactttgatgactctttttgcccatatgcccacccccatca 11313318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 257
Target Start/End: Complemental strand, 10715702 - 10715642
Alignment:
Q  197 cacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttga 257  Q
    |||||||||||  |||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  10715702 cacaaattctacgacaccaacattcaagcactctcacagcaccattaaacatggagcttga 10715642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 28247674 - 28247774
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  28247674 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 28247773  T
Q  313 t 313  Q
    |    
T  28247774 t 28247774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 6784000 - 6783932
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  6784000 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 6783932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 11022125 - 11022025
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccc-catcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || |||||  ||||||  ||||||| ||||||||    
T  11022125 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgtccatatgaccacccctcatcattt 11022026  T
Q  313 t 313  Q
    |    
T  11022025 t 11022025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 37021547 - 37021667
Alignment:
Q  142 agggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcacca 240  Q
    ||||||||||||||| | ||||||||| || || ||||| || | | | || |||||||||||||||| ||||||||||| |||| ||| ||||||| ||    
T  37021547 agggcaagcatagaaaggccttcctgggttattgacagtgtttgctcttcttacaacacaaattctaggacaccaacattgaagctctcccacatcatca 37021646  T
Q  241 ttaaacttggagcttgaagat 261  Q
    ||  || | ||||||||||||    
T  37021647 ttgtacatagagcttgaagat 37021667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 17697570 - 17697656
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||| |||| ||| || |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  17697570 acagtgttggcttttctgacaacacaaattctaggacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 17697656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 25620572 - 25620605
Alignment:
Q  228 tctcacatcaccattaaacttggagcttgaagat 261  Q
    ||||||||||||||||||||||||||||||||||    
T  25620572 tctcacatcaccattaaacttggagcttgaagat 25620605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 40561319 - 40561380
Alignment:
Q  181 ttggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccatt 242  Q
    |||||||| || |||||||||||| ||| ||||||||||| |||| ||||||||||| ||||    
T  40561319 ttggtttttcttacaacacaaattataggacaccaacattgaagctctctcacatcatcatt 40561380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 2768295 - 2768363
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  2768295 acaacacaaattctaggacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 2768363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 38149535 - 38149635
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    ||||||| ||||  ||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||  ||||| ||||||||||    
T  38149535 caacatttaagcattctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatatgaccacctcccatcattt 38149634  T
Q  313 t 313  Q
    |    
T  38149635 t 38149635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 39663849 - 39663737
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || ||||||  ||||||| | ||||||| | || || || || |||| ||| || |||||||||||||||| |||||||||||    
T  39663849 gttaaacaaacttttggcagagggcagacatagaaaggccttcctagattattgacggtgttggcttttcttacaacacaaattctaggacaccaacatt 39663750  T
Q  221 caagcgctctcac 233  Q
     |||| |||||||    
T  39663749 gaagctctctcac 39663737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 19581874 - 19581735
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || |||| |  ||||||| |  |||||||| || || ||||| |||| ||| || |||| ||||||||||| || ||||||||    
T  19581874 gttaaacaaacctttggcagagggaagacatagaaaggtcttcctgggttattgacagtgttggcttttcttacaatacaaattctaggacgccaacatt 19581775  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaaga 260  Q
     |||| ||||||||||| ||||  || | |||||||||||    
T  19581774 gaagctctctcacatcatcattgtacatagagcttgaaga 19581735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 305
Target Start/End: Original strand, 42003159 - 42003194
Alignment:
Q  270 actttcataactgttttttcccatattcccaccccc 305  Q
    ||||||||||| ||||||||||||||||||||||||    
T  42003159 actttcataacagttttttcccatattcccaccccc 42003194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 6902299 - 6902439
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    |||||||||||||||| || ||||||  ||||||| ||||||||||| || || ||||| |||| ||| || || ||||||||||||| |||||||||||    
T  6902299 gttaaacaaacatttggcagagggcagacatagaaagaccttcctgggttattgacagtgttggcttttcttactacacaaattctaggacaccaacatt 6902398  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| ||||  || | ||||||||||||    
T  6902399 gaagctctctcacatcatcattgtacatagagcttgaagat 6902439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 9399458 - 9399598
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttta-cagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||  |||| || ||||||||||||||| | ||||||||| || ||  |||| |||| ||| || |||||||||||||||| |||||||||||    
T  9399458 gttaaacaaatctttggcaaagggcaagcatagaaaggccttcctggattattggcagtgttggcttttcttacaacacaaattctaggacaccaacatt 9399557  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     |||| ||||||||||| |||| |||   ||||||||||||    
T  9399558 gaagctctctcacatcatcattgaacagagagcttgaagat 9399598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 33267732 - 33267593
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| ||||| ||||||||| || ||||||||| |||| || ||| | |||  ||| || |||||||||||||||| |||||||||||    
T  33267732 gttaaacaaacctttgacatagagcaagcataaaaagaccttcctaggttattgacaatgttgacttttcttacaacacaaattctaggacaccaacatt 33267633  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaaga 260  Q
     |||| ||||||||||| ||||  || | |||||||||||    
T  33267632 gaagctctctcacatcatcattgcacatagagcttgaaga 33267593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 34344824 - 34344923
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacccccatcatttt 313  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||| | |||||  ||||| ||| || ||||| |||||||  ||||||| ||||||||    
T  34344824 caacattcaagcactctcacatcaccattaaacatggaggatgaagttgaagcttgactttgatagctctttttgcccatatgaccaccccaatcatttt 34344923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 17951152 - 17951052
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatattcccacc-cccatcattt 312  Q
    |||||||||||| |||||||||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||| ||  ||||| ||||||||||    
T  17951152 caacattcaagcactctcacatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccaaatgaccacctcccatcattt 17951053  T
Q  313 t 313  Q
    |    
T  17951052 t 17951052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 261
Target Start/End: Complemental strand, 32454924 - 32454856
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||| ||||  || | ||||||||||||    
T  32454924 acaacacaaattctaggacaccaacattgaagctctctcacatcatcattgtacatagagcttgaagat 32454856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 260
Target Start/End: Original strand, 7050962 - 7051047
Alignment:
Q  175 acagtattggttttactaacaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaaga 260  Q
    ||||| |||| ||| || |||||||||||| ||| ||||||||||| |||| ||||||||||| ||||  || | |||||||||||    
T  7050962 acagtgttggcttttcttacaacacaaattataggacaccaacattgaagctctctcacatcatcattttacatagagcttgaaga 7051047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 32437866 - 32437726
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcct-ggttttttacagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| ||   || ||||||||||||||| | ||||||| |||| || ||||| || | | | || |||||||||||||||| ||| |||||||    
T  32437866 gttaaacaaaccttatgcagagggcaagcatagaaaggccttcctgggttattgacagtgtttgctgttcttacaacacaaattctaggacaacaacatt 32437767  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
     ||||  |||||||||| ||||  || | ||||||||||||    
T  32437766 gaagctttctcacatcatcattgtacatagagcttgaagat 32437726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 260
Target Start/End: Original strand, 10569620 - 10569687
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaaga 260  Q
    |||||||||||||||| ||||||||||| |||| | ||||||||| ||||  || | |||||||||||    
T  10569620 acaacacaaattctaggacaccaacattgaagctcgctcacatcatcattgtacatagagcttgaaga 10569687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 295
Target Start/End: Complemental strand, 35174974 - 35174893
Alignment:
Q  214 caacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttttcccatat 295  Q
    ||||||||| || |||||| ||||||||||||| |||||  ||||||| |||||  ||||| ||| || ||||| |||||||    
T  35174974 caacattcaggcactctcatatcaccattaaacatggaggatgaagatgaagcttgactttgatagctctttttgcccatat 35174893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 11356607 - 11356675
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||  ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  11356607 acaacacaaattctatgacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 11356675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 17936022 - 17936110
Alignment:
Q  200 aaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgtttttt 288  Q
    ||||||||| ||||||| | ||||||  ||| ||||||||||||||| |  |  |||||||| |||||| ||||| | |||||||||||    
T  17936022 aaattctaggacaccaatagtcaagcattctgacatcaccattaaacataaattttgaagatgaagctcgactttgagaactgtttttt 17936110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 20524789 - 20524857
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||| ||||||||||| |||| |||| || ||| ||||  || | ||||||||||||    
T  20524789 acaacacaaattctaggacaccaacattgaagctctctaacctcatcattgtacatagagcttgaagat 20524857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 287
Target Start/End: Complemental strand, 107371 - 107205
Alignment:
Q  122 gttaaacaaacatttgtcatagggcaagcatagaatgaccttcctggtttttt-acagtattggttttactaacaacacaaattctagaacaccaacatt 220  Q
    ||||||||||| |||| || |||||| |||||||| | ||||||||| || || ||| | |||  ||| || |||||||||||| ||| |||||||||||    
T  107371 gttaaacaaacctttggcagagggcatgcatagaaaggccttcctgggttattgacaatgttgaattttcttacaacacaaattttaggacaccaacatt 107272  T
Q  221 caagcgctctcacatcaccattaaacttggagcttgaagataaagctcaactttcataactgttttt 287  Q
     |||| ||||||||||| ||||  || | ||| |||||||| ||| || ||| |  |||||||||||    
T  107271 gaagctctctcacatcatcattgtacattgagtttgaagatgaagatcgactgttgtaactgttttt 107205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 261
Target Start/End: Original strand, 968 - 1036
Alignment:
Q  193 acaacacaaattctagaacaccaacattcaagcgctctcacatcaccattaaacttggagcttgaagat 261  Q
    |||||||||||||||  ||||||||||| |||| ||||||| ||| ||||  || | ||||||||||||    
T  968 acaacacaaattctatgacaccaacattgaagctctctcacctcatcattgtacatagagcttgaagat 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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