View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7122_low_9 (Length: 281)
Name: NF7122_low_9
Description: NF7122
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7122_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 3301073 - 3301321
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301073 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
3301172 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301173 |
ccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
3301272 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3301273 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
3301321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 43045790 - 43046038
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43045790 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43045889 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43045890 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43045989 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43045990 |
tctttctcaaacctctcaatgacacgcttgtcaatacctccaagcttgt |
43046038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 43066617 - 43066369
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43066617 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43066518 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43066517 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43066418 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
43066417 |
tctttctcaaacctctcaatgacacgcttgtcaatacctccaagtttgt |
43066369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 43084218 - 43084466
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43084218 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43084317 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43084318 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43084417 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
43084418 |
tctttctcaaacctctctatgacacgcttgtcaatacctccaagcttgt |
43084466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 43045337 - 43045576
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||| |
|
|
| T |
43045337 |
cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt |
43045436 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43045437 |
ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcagcagct |
43045536 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctc |
255 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
43045537 |
tctttctcaaacctctcaatgacacgcttgtcaatacctc |
43045576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 45983654 - 45983405
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
45983654 |
cacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaactt |
45983555 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
| |||| | |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
45983554 |
cgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcttgttcatcttagcagct |
45983455 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtg |
265 |
Q |
| |
|
|||||||||| |||||||| |||| ||||| ||||| |||||| ||||| |
|
|
| T |
45983454 |
tctttctcaagactctcaatgacactcttgtgaatacatccaagtttgtg |
45983405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 38137802 - 38137554
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
38137802 |
cacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactt |
38137703 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||| |
|
|
| T |
38137702 |
tgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagtagct |
38137603 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
|||||||||| |||||||| ||| ||| |||||||||||||| |||| |
|
|
| T |
38137602 |
tctttctcaagtctctcaatgacatccttttcaatacctccaagtttgt |
38137554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 45993434 - 45993185
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||||||||| || || || ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
45993434 |
cacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaactt |
45993335 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
| ||| || | ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45993334 |
cgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacgcttgatcatctcagcagct |
45993235 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtg |
265 |
Q |
| |
|
|||||||||| ||||| || |||| ||||| ||||| |||||| ||||| |
|
|
| T |
45993234 |
tctttctcaagactctcgatgacactcttgtgaatacatccaagtttgtg |
45993185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 7890986 - 7890738
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||| ||||||| ||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| | | || || ||||||||||| |
|
|
| T |
7890986 |
cacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggttgtctcaaactt |
7890887 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
7890886 |
ccacagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaatgcctgttcatctcagcagct |
7890787 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||| || || || ||| ||| ||||||||||||||||||| |
|
|
| T |
7890786 |
tctttctcaaatctatcgatgacatccttttcaatacctccaagcttgt |
7890738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 42 - 264
Target Start/End: Complemental strand, 7888695 - 7888473
Alignment:
| Q |
42 |
atcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatac |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||| | || |||| ||||||||| |||| ||||||||||||||||| |
|
|
| T |
7888695 |
atcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatac |
7888596 |
T |
|
| Q |
142 |
ctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacg |
241 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||| |||| |||||||||||||||||||||| |||| || ||| |
|
|
| T |
7888595 |
ctctttcacgctcagccttgagtttgtcaagcacccaagcatacttgaataaacgtctgtttatctcagcagcttctttctcaagtttctcgatgacatc |
7888496 |
T |
|
| Q |
242 |
cttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
7888495 |
cttttcaatacctccaagcttgt |
7888473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 42 - 264
Target Start/End: Original strand, 51291985 - 51292206
Alignment:
| Q |
42 |
atcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatac |
141 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| |||||| |||||||| | || |||||||| | |||| ||||||||||||||||| |
|
|
| T |
51291985 |
atcatgttcttaatgaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatac |
51292083 |
T |
|
| Q |
142 |
ctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacg |
241 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||| || |
|
|
| T |
51292084 |
ctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctcagtagcttctttctcaagtctctcaatgtcatt |
51292183 |
T |
|
| Q |
242 |
cttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
51292184 |
cttgtcaatacctccaagcttgt |
51292206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 44 - 264
Target Start/End: Complemental strand, 40034612 - 40034394
Alignment:
| Q |
44 |
catgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatacct |
143 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| ||||||| |||||||| ||| || || ||||||||||| ||| | ||| |||||||| | |||| |
|
|
| T |
40034612 |
catgttcttgatgaaatc--tgtgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaaacttggacatggaaatatcaattgtaacacct |
40034515 |
T |
|
| Q |
144 |
ctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgct |
243 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||| || |
|
|
| T |
40034514 |
ctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttcatctcagcagcttctttctcaaatttctcaatgacatcct |
40034415 |
T |
|
| Q |
244 |
tgtcaatacctccaagcttgt |
264 |
Q |
| |
|
| | |||||| |||||||||| |
|
|
| T |
40034414 |
ttttaataccgccaagcttgt |
40034394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 43076730 - 43076483
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||||||||| || ||||| ||||||||||||||||||| | ||||||| ||| ||||||||||| |||| ||| ||| || ||||||||||| |
|
|
| T |
43076730 |
cacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaatgacaacgcagcagttctttgttgtctcaaactt |
43076631 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||| |||| ||| ||||| || ||||||||||||||||||||| |||||||||| || | ||| |||||||||| |||| ||| ||| ||||||||| |
|
|
| T |
43076630 |
ccagagagaaatctcaatggt-atacctctttcacgttcagccctgagcttgtcaaggatccaggcatacttgactgaagtcttacccatttcagcagct |
43076532 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||| |||||||| ||||||| |||| |||||||| ||||||||| |||| |
|
|
| T |
43076531 |
tctatctcaaacttctcaatgacactcttgtcaacacctccaagtttgt |
43076483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 4231810 - 4232058
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4231810 |
cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt |
4231909 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4231910 |
ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacgcttgttcatctcagcagct |
4232009 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4232010 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
4232058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 1846735 - 1846983
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||| ||||||| ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||| | | || || ||||||||||| |
|
|
| T |
1846735 |
cacagtcagcttcggatgctccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaactt |
1846834 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
1846835 |
ccatagagaaatgtcaattgtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgcctgtttatctcagcagct |
1846934 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||| ||||| || ||| ||| ||||||||||||||||||| |
|
|
| T |
1846935 |
tctttctcaaatctctcgatgacatccttttcaatacctccaagcttgt |
1846983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 4620033 - 4620281
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
4620033 |
cacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctcaaactt |
4620132 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||| ||| |
|
|
| T |
4620133 |
ggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcagcggct |
4620232 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||| | |||||| ||| ||| | ||||||||||||||||| |
|
|
| T |
4620233 |
tctttctcaaatcgctcaatgacatcctttttaatacctccaagcttgt |
4620281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 42 - 264
Target Start/End: Complemental strand, 4787426 - 4787204
Alignment:
| Q |
42 |
atcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatac |
141 |
Q |
| |
|
||||||||| ||||| | |||||||||||||| ||||||||||||||||||| |||||| | ||||||||||| ||| || ||||||||||||| || |
|
|
| T |
4787426 |
atcatgttcctaatgtattccctgtgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcac |
4787327 |
T |
|
| Q |
142 |
ctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacg |
241 |
Q |
| |
|
|||||||||| ||| ||||||| ||||| |||||||||||||||||||||||| || ||| |||| |||||||||||||| |||||||| ||| |
|
|
| T |
4787326 |
ctctttcacgctcacccttgagtttgtcaagcacccaagcatacttgaatgaaggccagttagcctcataagcttctttctcaagtctctcaatgacatc |
4787227 |
T |
|
| Q |
242 |
cttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||| |||| ||||||||||||| |
|
|
| T |
4787226 |
ctttccaatgcctccaagcttgt |
4787204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 4297812 - 4298056
Alignment:
| Q |
12 |
acatcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaa |
111 |
Q |
| |
|
|||||||| | |||| |||| | |||||| |||||||||||||| | ||||| ||||||||||||||||||||| |||||| |||||| | ||||||| |
|
|
| T |
4297812 |
acatcacagttagctagggacgctccagtggtcatgttcttaatgcattccctatgtccgggggcatcaatgacaatgcagttgtacttgtttgtctcaa |
4297911 |
T |
|
| Q |
112 |
acttccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagc |
211 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||| | ||||| ||||| ||||| || ||||||||||||||||| ||| || |||| | |||| | |
|
|
| T |
4297912 |
acttggacagagaaatgtcaattgtggcacctctttcatggtcagctttgagtttgtcaagtacccaagcatacttgaacgaaggcatgttaacctcaac |
4298011 |
T |
|
| Q |
212 |
agcttctttctcaaacctctcaatcacacgcttgtcaatacctcc |
256 |
Q |
| |
|
| || ||||||||| |||||||| ||| ||| ||||| ||||| |
|
|
| T |
4298012 |
atctactttctcaagtctctcaatgacatccttttcaatgcctcc |
4298056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 7529032 - 7528784
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||| |||||||| | |||||||| ||||||||||| |||||||||||||| || |||||||| || |
|
|
| T |
7529032 |
cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaattt |
7528933 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
||||| ||||| || || || || ||||||||||| |||||||| || ||||| || ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7528932 |
ccacaaggcaatatcgatggtaattcctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcatctcagcagct |
7528833 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
7528832 |
tccttctcaaatctctcgatcacacgcttgtcaatacctcctagcttgt |
7528784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 7519676 - 7519413
Alignment:
| Q |
1 |
caatgagatggacatcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtactt |
100 |
Q |
| |
|
|||||| | ||||| |||||||||| ||||| |||||||||||||||||||| |||||||| | |||||||| ||||||||||| |||||||||||||| |
|
|
| T |
7519676 |
caatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtactt |
7519577 |
T |
|
| Q |
101 |
agtagtctcaaacttccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttg |
200 |
Q |
| |
|
|| |||||||| ||||||| |||||| ||||| || || ||||||||||| |||||||| |||||||| || ||||| || |||||||| || | |||| |
|
|
| T |
7519576 |
ggtggtctcaaatttccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaaagacctcttg |
7519477 |
T |
|
| Q |
201 |
ttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
7519476 |
ttcatctcagcagcttccttctcgaatctctcgatcacacgcttgtcaatacctcctagcttgt |
7519413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 8e-70; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 34691170 - 34691416
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||| ||||||||||| || || || |||||||||||||||||||||||||||||||| |||||||||| |||| || ||||||| || ||||||||||| |
|
|
| T |
34691170 |
cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt |
34691269 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34691270 |
gcataga--aatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagct |
34691367 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
|||||| ||| |||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
34691368 |
tctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgt |
34691416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 16 - 264
Target Start/End: Original strand, 34713582 - 34713828
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
|||| ||||||||||| || || || |||||||||||||||||||||||||||||||| |||||||||| |||| || ||||||| || ||||||||||| |
|
|
| T |
34713582 |
cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt |
34713681 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34713682 |
gcataga--aatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcagcagct |
34713779 |
T |
|
| Q |
216 |
tctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgt |
264 |
Q |
| |
|
|||||| ||| |||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
34713780 |
tctttcccaagtgcctcaatggcactcttttcaatacctccaagcttgt |
34713828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 51 - 264
Target Start/End: Original strand, 16232552 - 16232765
Alignment:
| Q |
51 |
ttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtgatacctctttcac |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||| || ||||||||||| |||| | |||||||||||||||||||||||||| |
|
|
| T |
16232552 |
ttaatgaaatccctgtgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcac |
16232651 |
T |
|
| Q |
151 |
gttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagcttctttctcaaacctctcaatcacacgcttgtcaat |
250 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||| ||| ||| | ||| |
|
|
| T |
16232652 |
gctcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcatcttcatctcagcagcttctttcccaagtgcctcaatggcactcttttgaat |
16232751 |
T |
|
| Q |
251 |
acctccaagcttgt |
264 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
16232752 |
acctccaagcttgt |
16232765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 33861181 - 33861431
Alignment:
| Q |
18 |
caatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaacttcc |
117 |
Q |
| |
|
|||||||| | |||||| ||| |||||||||||||||| ||||||||||||| |||||||||||||||||| | ||||| | |||||||| || | |
|
|
| T |
33861181 |
caatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccaggggcatcaatgacagtgtaccggtactggtttgtctcaaaattac |
33861280 |
T |
|
| Q |
118 |
acagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaa---gcatacttgaatgaacgcttgttcatctcagcagc |
214 |
Q |
| |
|
|| || || |||||| | ||||||||||||||| ||||||| ||||||||| || |||||| |||||||||||||||| ||||| |||| |||||| |
|
|
| T |
33861281 |
gcatagaaacgtcaatggagatacctctttcacgctcagcctcgagcttgtcaagaacccaattagcatacttgaatgaacacttgtcgatctgagcagc |
33861380 |
T |
|
| Q |
215 |
ttctttctcaaacctctcaatcacacgcttgtcaatacctccaagcttgtg |
265 |
Q |
| |
|
||||| ||||| || ||||| ||| |||||||||||| |||||||||||| |
|
|
| T |
33861381 |
ttcttcctcaagactgtcaatgacatgcttgtcaatacatccaagcttgtg |
33861431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 225
Target Start/End: Original strand, 16349482 - 16349691
Alignment:
| Q |
16 |
cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| || |||||||| || |
|
|
| T |
16349482 |
cacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaatt |
16349581 |
T |
|
| Q |
116 |
ccacagagcaatgtcaattgtgatacctctttcacgttcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcagcagct |
215 |
Q |
| |
|
| ||| || | |||||||||||||||||||||| || ||||||||||| ||||| || ||||| ||||||||||| ||| |||||| | |||||||||| |
|
|
| T |
16349582 |
caacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaaagaatccttgtttaactcagcagct |
16349681 |
T |
|
| Q |
216 |
tctttctcaa |
225 |
Q |
| |
|
| ||||||| |
|
|
| T |
16349682 |
ttattctcaa |
16349691 |
T |
|
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Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 39242214 - 39242152
Alignment:
| Q |
76 |
catcaatgacagtgcagtagtacttagtagtctcaaacttccacagagcaatgtcaattgtga |
138 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
39242214 |
catcaatgacagtgcagtagtactttgttgtctcaaacttggacagagcaatgtcaattgtga |
39242152 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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