View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7123_low_1 (Length: 431)

Name: NF7123_low_1
Description: NF7123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7123_low_1
NF7123_low_1
[»] chr5 (22 HSPs)
chr5 (20-421)||(8547454-8547855)
chr5 (285-405)||(9074125-9074245)
chr5 (290-401)||(1599691-1599802)
chr5 (287-405)||(8529538-8529656)
chr5 (295-405)||(8536110-8536220)
chr5 (20-125)||(8529294-8529403)
chr5 (329-399)||(2844444-2844514)
chr5 (329-399)||(2856277-2856347)
chr5 (329-399)||(2873887-2873957)
chr5 (329-399)||(2904393-2904463)
chr5 (20-125)||(1599940-1600049)
chr5 (20-125)||(8535858-8535967)
chr5 (20-123)||(2874139-2874246)
chr5 (21-125)||(8641738-8641846)
chr5 (20-123)||(2856529-2856636)
chr5 (67-125)||(2904643-2904705)
chr5 (20-122)||(9074369-9074475)
chr5 (194-241)||(8536024-8536071)
chr5 (302-396)||(11353898-11353992)
chr5 (302-396)||(11373401-11373495)
chr5 (68-125)||(8644623-8644684)
chr5 (170-222)||(8644717-8644769)
[»] scaffold0627 (2 HSPs)
scaffold0627 (186-420)||(5187-5418)
scaffold0627 (20-128)||(5023-5135)
[»] chr6 (2 HSPs)
chr6 (186-417)||(16716885-16717113)
chr6 (19-128)||(16716723-16716836)
[»] chr7 (5 HSPs)
chr7 (289-405)||(48361239-48361355)
chr7 (285-401)||(35780427-35780544)
chr7 (20-125)||(48361492-48361601)
chr7 (194-241)||(35780336-35780383)
chr7 (194-241)||(48361388-48361435)
[»] chr4 (2 HSPs)
chr4 (287-405)||(9443699-9443817)
chr4 (20-125)||(9443455-9443564)


Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 8547855 - 8547454
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgta 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547855 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccacttatttctccatgttggtgttccgagtgtgtgta 8547756  T
Q  120 tctcaacaattaccacacgctcaatctcacatgcataatcacatattgcacgtctagcatatttcttccaaatatttatcactttatattcattagtttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547755 tctcaacaattaccacacgctcaatctcacatgcataatcacatattgcacgtctagcatatttcttccaaatatttatcactttatattcattagtttt 8547656  T
Q  220 aggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaatcgtagtagcttcaagaagtcttatgaactcccct 319  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547655 aggatagaaaccacaaccagctgcttcttgatttaaaatataagctgtgtcatttggcatacgaatcgtagtagcttcaagaagtcttatgaactcccct 8547556  T
Q  320 gtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaatatcaaaatgatcacgatctc 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547555 gtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaatatcaaaatgatcacgatctc 8547456  T
Q  420 tg 421  Q
    ||    
T  8547455 tg 8547454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 285 - 405
Target Start/End: Complemental strand, 9074245 - 9074125
Alignment:
Q  285 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccact 384  Q
    |||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| || ||| |    
T  9074245 tcgtggtagcttcaggaagtcttatgaactcccctgtgactgggttgcagatcactgaagggtttccggtagttggttcagacaaacaaagtaaaccatt 9074146  T
Q  385 gcaagaattcacaatatcaaa 405  Q
    |||||||||||||||||||||    
T  9074145 gcaagaattcacaatatcaaa 9074125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 1599802 - 1599691
Alignment:
Q  290 gtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaag 389  Q
    |||| |||| ||||||||||||||||||| |||||||| |||||||||||||| |||||||||  |  ||| |||||||||||||| || ||| ||||||    
T  1599802 gtagattcaggaagtcttatgaactccccagtgattgggttgcagatcactaatgggtttccgaaatatgggtcagacaaacaaagtaaaccattgcaag 1599703  T
Q  390 aattcacaatat 401  Q
    ||||||||||||    
T  1599702 aattcacaatat 1599691  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 287 - 405
Target Start/End: Original strand, 8529538 - 8529656
Alignment:
Q  287 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 386  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  8529538 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 8529637  T
Q  387 aagaattcacaatatcaaa 405  Q
    |||||||||||||||||||    
T  8529638 aagaattcacaatatcaaa 8529656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 295 - 405
Target Start/End: Original strand, 8536110 - 8536220
Alignment:
Q  295 ttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattc 394  Q
    |||| |||||||||| |||||||| |||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||||||||    
T  8536110 ttcaggaagtcttataaactccccagtgactgggttgcagatcactaatgggtttccaaaagatgggtcagacaaacaaagtaaaccattgcaagaattc 8536209  T
Q  395 acaatatcaaa 405  Q
    |||||||||||    
T  8536210 acaatatcaaa 8536220  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 8529294 - 8529403
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||||    
T  8529294 ccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtg 8529393  T
Q  116 tgtatctcaa 125  Q
    | ||||||||    
T  8529394 tttatctcaa 8529403  T

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Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 2844514 - 2844444
Alignment:
Q  329 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 399  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2844514 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2844444  T

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Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 2856347 - 2856277
Alignment:
Q  329 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 399  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2856347 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2856277  T

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Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 2873957 - 2873887
Alignment:
Q  329 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 399  Q
    ||||| |||||||||||| ||||| ||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2873957 ttgcaaatcactaaagggcttccgatagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2873887  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 2904463 - 2904393
Alignment:
Q  329 ttgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcacaat 399  Q
    ||||| ||| |||||||| ||||||||| || |||||| ||||||||||||||| ||||||||||||||||    
T  2904463 ttgcaaatcgctaaagggcttccggtagatgtttcagataaacaaagcaagccattgcaagaattcacaat 2904393  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 1600049 - 1599940
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||||| ||||||||||||||||| | ||||     || |||||||||||||||||||||    ||||||||| | ||||||||| ||||||    
T  1600049 ccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtgttccaagtgtg 1599950  T
Q  116 tgtatctcaa 125  Q
    | ||||||||    
T  1599949 tttatctcaa 1599940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 8535858 - 8535967
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||| ||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | ||| ||||| ||||||    
T  8535858 ccaatgtagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtg 8535957  T
Q  116 tgtatctcaa 125  Q
    | ||||||||    
T  8535958 tttatctcaa 8535967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 2874246 - 2874139
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| |||||||||||| |||    
T  2874246 ccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcgtg 2874147  T
Q  116 tgtatctc 123  Q
    ||||||||    
T  2874146 tgtatctc 2874139  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 8641738 - 8641846
Alignment:
Q  21 caatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgt 116  Q
    ||||||||  ||| ||||||||||||||||||| |||||   |||  |||||| |||||||||||||    ||||||||||| ||||| ||| |||||||    
T  8641738 caatgaagaacactattcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgt 8641837  T
Q  117 gtatctcaa 125  Q
     ||||||||    
T  8641838 ttatctcaa 8641846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 2856636 - 2856529
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||| | ||||||||| || |||| || ||| |   || |||||||||||||||||||||    ||||||||||| || ||||||||| |||    
T  2856636 ccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcgtg 2856537  T
Q  116 tgtatctc 123  Q
    ||||||||    
T  2856536 tgtatctc 2856529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 2904705 - 2904643
Alignment:
Q  67 aagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 125  Q
    |||||||||||||||||||||    ||||||||||| || ||||||||| |||||||||||||    
T  2904705 aagaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaa 2904643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 20 - 122
Target Start/End: Complemental strand, 9074475 - 9074369
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||||| |||||||||||||||||||   |||    || |||||||||||||||||||||    ||||||| || ||| |||||| ||||||    
T  9074475 ccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttgttccaagtgtg 9074376  T
Q  116 tgtatct 122  Q
    | |||||    
T  9074375 tttatct 9074369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 8536024 - 8536071
Alignment:
Q  194 tttatcactttatattcattagttttaggatagaaaccacaaccagct 241  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  8536024 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 8536071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 11353992 - 11353898
Alignment:
Q  302 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 396  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11353992 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11353898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 11373401 - 11373495
Alignment:
Q  302 agtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaagaattcac 396  Q
    |||||||| ||||| ||| | ||||||||||| |  |||||| ||||| | |||  ||| ||||| ||||||||||||||| |||| ||||||||    
T  11373401 agtcttataaactcacctataattggattgcaaacaactaaatggtttacagtatatggctcagataaacaaagcaagccattgcaggaattcac 11373495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 8644623 - 8644684
Alignment:
Q  68 agaaatttgaggatccactt----atttctccatgttggtgttccgagtgtgtgtatctcaa 125  Q
    ||||||||||||||| ||||    ||||||||||| ||||||||| ||||||| ||||||||    
T  8644623 agaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaa 8644684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 8644717 - 8644769
Alignment:
Q  170 cgtctagcatatttcttccaaatatttatcactttatattcattagttttagg 222  Q
    |||||| ||||||| | ||||||||  ||||| ||||||||||||||||||||    
T  8644717 cgtctaacatatttgtcccaaatatacatcaccttatattcattagttttagg 8644769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 186 - 420
Target Start/End: Original strand, 5187 - 5418
Alignment:
Q  186 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 285  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||   |||||   ||  |||  | | ||||||| |||||||||||     
T  5187 tccaaatatgtatcactttatattcattagtcgtaggatagaaaccaaaaccagct---tcttgtcctattacacgaaccgtgtcatgtggcatacgaac 5283  T
Q  286 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 385  Q
    |||| |||||||| |||||||||||||||||||  ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |     
T  5284 cgtattagcttcaggaagtcttatgaactcccccatgaatgggttgcagatcactaaagggtttccggtagttggttgagacaaacatagcaagccatta 5383  T
Q  386 caagaattcacaatatcaaaatgatcacgatctct 420  Q
    || ||||||||||||  ||||| ||| ||||||||    
T  5384 caggaattcacaatactaaaattatcgcgatctct 5418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 5023 - 5135
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||||| ||||||||||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||| |||||||||||||    
T  5023 ccaatgaagtgcaccattcacacaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttgatgttccgagtgtg 5122  T
Q  116 tgtatctcaacaa 128  Q
    |||||||| ||||    
T  5123 tgtatctcgacaa 5135  T

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Target: chr6 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 186 - 417
Target Start/End: Original strand, 16716885 - 16717113
Alignment:
Q  186 tccaaatatttatcactttatattcattagttttaggatagaaaccacaaccagctgcttcttgatttaaaacataatctgtgtcatttggcatacgaat 285  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||   |||||   ||  |||| | |  ||||||| ||||||||||     
T  16716885 tccaaatatgtatcactttatattcattagttttaggatagaaaccaaaaccagct---tcttgtcctattacatgaaccctgtcattcggcatacgaac 16716981  T
Q  286 cgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactg 385  Q
     ||||||| |||| ||||||||||||| |||||  ||| ||| ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| |     
T  16716982 tgtagtagtttcaggaagtcttatgaattcccccatgaatgggttgcagatcactatagggtttccagtagttggttcagacaaacatagcaagccatta 16717081  T
Q  386 caagaattcacaatatcaaaatgatcacgatc 417  Q
    || ||||||||||||| ||| | |||||||||    
T  16717082 catgaattcacaatattaaacttatcacgatc 16717113  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 16716723 - 16716836
Alignment:
Q  19 accaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccac----ttatttctccatgttggtgttccgagtgt 114  Q
    ||||||||||||||| ||||||||||||||||| ||||||| | ||| | |||||||||||||||||     ||||||||||||||||||||||||||||    
T  16716723 accaatgaagtgcaccattcacacaagtgggattcataagacatgaaaatgaaatttgaggatccacattgatatttctccatgttggtgttccgagtgt 16716822  T
Q  115 gtgtatctcaacaa 128  Q
    ||||||||||||||    
T  16716823 gtgtatctcaacaa 16716836  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 289 - 405
Target Start/End: Complemental strand, 48361355 - 48361239
Alignment:
Q  289 agtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgcaa 388  Q
    ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||   || ||| |||||||||||||| || ||| |||||    
T  48361355 agtagattcaggaagtcttatgaactcccctgtgactgggttgcagatcactaacgggtttcccaaagatggatcagacaaacaaagtaaaccattgcaa 48361256  T
Q  389 gaattcacaatatcaaa 405  Q
    |||||||||||||||||    
T  48361255 gaattcacaatatcaaa 48361239  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 285 - 401
Target Start/End: Original strand, 35780427 - 35780544
Alignment:
Q  285 tcgtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaaggg-tttccggtagttggttcagacaaacaaagcaagccac 383  Q
    |||||||||||||| ||||||||||||||||||| |||| ||| ||||| |||||||||||| ||| |||||  ||| | ||||||||||||||| |||     
T  35780427 tcgtagtagcttcaggaagtcttatgaactcccccgtgactgggttgcaaatcactaaagggtttttcggtatatggattagacaaacaaagcaaaccat 35780526  T
Q  384 tgcaagaattcacaatat 401  Q
    |||||||||| |||||||    
T  35780527 tgcaagaattgacaatat 35780544  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 48361601 - 48361492
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||||| |||||||||||||||||||   |||   ||| ||||||| |||||||||||||    ||| ||||| | ||||||||| ||||||    
T  48361601 ccaatgaagtgcaccattcacacaagtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtgtg 48361502  T
Q  116 tgtatctcaa 125  Q
    | ||||||||    
T  48361501 tttatctcaa 48361492  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 35780336 - 35780383
Alignment:
Q  194 tttatcactttatattcattagttttaggatagaaaccacaaccagct 241  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  35780336 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 35780383  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 48361435 - 48361388
Alignment:
Q  194 tttatcactttatattcattagttttaggatagaaaccacaaccagct 241  Q
    |||||||| |||||||||||||||||||| | ||||||| ||||||||    
T  48361435 tttatcaccttatattcattagttttaggttggaaaccaaaaccagct 48361388  T

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Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 287 - 405
Target Start/End: Original strand, 9443699 - 9443817
Alignment:
Q  287 gtagtagcttcaagaagtcttatgaactcccctgtgattggattgcagatcactaaagggtttccggtagttggttcagacaaacaaagcaagccactgc 386  Q
    ||||||| |||| ||||||||||||||||||| |||| ||| |||||||||||||  ||||||||   || ||| |||||||||||||| || ||| |||    
T  9443699 gtagtagattcaggaagtcttatgaactcccccgtgactgggttgcagatcactattgggtttccaaaagatgggtcagacaaacaaagtaaaccattgc 9443798  T
Q  387 aagaattcacaatatcaaa 405  Q
    |||||||||||||||||||    
T  9443799 aagaattcacaatatcaaa 9443817  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 9443455 - 9443564
Alignment:
Q  20 ccaatgaagtgcacgattcacacaagtgggatacataagataagaagaagaaatttgaggatccactt----atttctccatgttggtgttccgagtgtg 115  Q
    |||||||||||||| ||||||||||||||||||| | |||   ||| |||||||||||||||||||||    ||||||||| | || |||||| ||||||    
T  9443455 ccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtgtg 9443554  T
Q  116 tgtatctcaa 125  Q
    | ||||||||    
T  9443555 tttatctcaa 9443564  T

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