View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7123_low_2 (Length: 424)
Name: NF7123_low_2
Description: NF7123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7123_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 38678492 - 38678369
Alignment:
| Q |
197 |
atatatatgtcattaaaaaagtgttaattattttgaggaatttgtattttattgtggtcttaccaacttgaaaatttagtcttcacaatttatcacagag |
296 |
Q |
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| T |
38678492 |
atatatatgtcattaaaaaagtgttaattattttgaggaatttgtaatttattgtggtcttatcaacttgaaaatttagtctccacagtttatcacacga |
38678393 |
T |
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| Q |
297 |
aataccagattatcagttcaaaag |
320 |
Q |
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| T |
38678392 |
aataccagattatcaattcaaaag |
38678369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 408
Target Start/End: Complemental strand, 38678329 - 38678281
Alignment:
| Q |
360 |
atgccaattatgaatgataattctataaagttactcataatttctcttc |
408 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38678329 |
atgccaactataaatgataattctataaagttactcataatttctcttc |
38678281 |
T |
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