View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7124_high_3 (Length: 222)
Name: NF7124_high_3
Description: NF7124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7124_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 6184432 - 6184619
Alignment:
| Q |
22 |
ctctaaacaatcattatggcttattcttcataatctattctaagtcttcttcataagcaaaaaatcaagaagtggtttatctgaaacaggtatcaacttc |
121 |
Q |
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| T |
6184432 |
ctctaaacaatcattatggcttattcttcataatctattctaagtcttcttcataagcaaaaaatcaagaagtggtttatctgaaacaggtatcaacttc |
6184531 |
T |
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| Q |
122 |
acaagaaaaccaattggccaagaaacagcaccaaaaccaatacaaataatccattctctccaattcaacctttctgtaccaccaaact |
209 |
Q |
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| T |
6184532 |
acaagaaaaccaattggccaagaaacagcaccaaaaccaatacaaataatccattctctccaattcaacctttctgtaccagcaaact |
6184619 |
T |
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Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 4235365 - 4235478
Alignment:
| Q |
79 |
caaaaaatcaagaagtggtttatctgaaacaggtatcaacttcacaagaaaaccaattggccaagaaacagcaccaaaaccaatacaaataatccattct |
178 |
Q |
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|||||||||||| | ||||| ||||| || ||||| |||||||| | ||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |
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| T |
4235365 |
caaaaaatcaagtaaaggtttgtctgagactggtataaacttcaccacaaatccaattggccaagaaacagcagcaaaaccaatacaaacaatccactct |
4235464 |
T |
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| Q |
179 |
ctccaattcaacct |
192 |
Q |
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| T |
4235465 |
ctccaattcaacct |
4235478 |
T |
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