View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7124_low_1 (Length: 822)
Name: NF7124_low_1
Description: NF7124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7124_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 769; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 15 - 812
Target Start/End: Complemental strand, 18161361 - 18160564
Alignment:
| Q |
15 |
ctgtgctgcgacaagctcttggagaaaggatcaggcctgttcttacagttaataagatggacaggtgcttccttgagctccaggttgatggagaggaggc |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18161361 |
ctgtgcttcgacaagctcttggagaaaggatcaggcctgttcttacagttaataagatggacaggtgcttccttgagctccaggttgatggagaggaggc |
18161262 |
T |
|
| Q |
115 |
gtaccagaccttttcaagggtgattgagaatgctaatgtgatcatggctacatatgaagatccacttcttggtgatgttcaggtgtatccagagaaagga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18161261 |
gtaccagaccttttcaagggtgattgagaatgctaatgtgatcatggctacatatgaagatccacttcttggtgatgttcaggtgtatccagagaaagga |
18161162 |
T |
|
| Q |
215 |
acagttgctttttctgctggtttgcatggttgggcttttactctgaccaactttgccaaaatgtatgcctcaaaatttggcgttgatgagtccaagatga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18161161 |
acagttgctttttctgctggtttgcatggttgggcttttactctgaccaactttgccaaaatgtatgcctcaaaatttggcgttgatgagtccaagatga |
18161062 |
T |
|
| Q |
315 |
tggagaggctctggggtgaaaatttcttcgatcctgccacnnnnnnntggaccaccaagaatactggttcagcttcttgcaagcgtgggtttgttcagtt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18161061 |
tggagaggctctggggtgaaaatttcttcgatcctgccacaaaaaaatggaccaccaagaatactggttcagcttcttgcaagcgtgggtttgttcagtt |
18160962 |
T |
|
| Q |
415 |
ctgttatgagcctatcaagcagatcatcaacacttgtatgaatgatcagaaggataagttgtggcctatgcttacaaagctaggggtcaccatgaagtct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18160961 |
ctgttatgagcctatcaagcagatcatcaacacttgtatgaatgatcagaaggataagttgtggcctatgcttacaaagctaggggtcaccatgaagtct |
18160862 |
T |
|
| Q |
515 |
gaagagaaggacctgatgggtaagccattgatgaaacgtgttatgcagacctggttgccagcaagtactgccctacttgaaatgatgatctttcatcttc |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18160861 |
gaagagaaggacctgatgggtaagccattgatgaaacgtgttatgcagacctggttgcctgcaagtactgccctacttgaaatgatgatctttcatcttc |
18160762 |
T |
|
| Q |
615 |
cctcaccatcaactgcccagaggtaccgtgttgagaatttgtatgagggcccccttgacgatcaatatgcaaatgccatccgaaactgtgatcctgaagg |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18160761 |
cctcaccatcaactgcccagaggtaccgtgttgagaatttgtatgagggcccccttgacgatcaatatgcaaatgccatccgaaactgtgatcctgaagg |
18160662 |
T |
|
| Q |
715 |
acctctgatgctttatgtgtcaaagatgattccagcatctgataaaggaaggttttttgcttttggccgtgtgtttgccggtaaggtttccacaggtt |
812 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18160661 |
acctctgatgctttatgtgtcaaagatgattccagcatctgataaaggaaggttttttgcttttggccgtgtgtttgccggtaaggtttccacaggtt |
18160564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 15 - 804
Target Start/End: Original strand, 28686775 - 28687564
Alignment:
| Q |
15 |
ctgtgctgcgacaagctcttggagaaaggatcaggcctgttcttacagttaataagatggacaggtgcttccttgagctccaggttgatggagaggaggc |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28686775 |
ctgtgctgcgacaggctcttggagaaaggatcaggccagttctgacagttaacaagatggacagatgcttccttgagctccaggttgatggagaggaggc |
28686874 |
T |
|
| Q |
115 |
gtaccagaccttttcaagggtgattgagaatgctaatgtgatcatggctacatatgaagatccacttcttggtgatgttcaggtgtatccagagaaagga |
214 |
Q |
| |
|
|| |||||||| || || || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||| |
|
|
| T |
28686875 |
ttatcagaccttctcgagagttattgagaatgctaatgtgatcatggctacatatgaagatccattgcttggtgatgttcaagtgtatcccgagaaagga |
28686974 |
T |
|
| Q |
215 |
acagttgctttttctgctggtttgcatggttgggcttttactctgaccaactttgccaaaatgtatgcctcaaaatttggcgttgatgagtccaagatga |
314 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||| | ||||||| |
|
|
| T |
28686975 |
acagttgctttctctgctggtttgcacggttgggcttttactctgaccaactttgcaaagatgtatgcctctaaatttggtgttgacgagacaaagatga |
28687074 |
T |
|
| Q |
315 |
tggagaggctctggggtgaaaatttcttcgatcctgccacnnnnnnntggaccaccaagaatactggttcagcttcttgcaagcgtgggtttgttcagtt |
414 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28687075 |
tggagaggctttggggtgaaaatttcttcgatcctgccactaagaaatggaccaccaagaatactggttcagctacttgcaagcgtgggtttgttcagtt |
28687174 |
T |
|
| Q |
415 |
ctgttatgagcctatcaagcagatcatcaacacttgtatgaatgatcagaaggataagttgtggcctatgcttacaaagctaggggtcaccatgaagtct |
514 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||| || |
|
|
| T |
28687175 |
ctgttatgagcctatcaagcaggtcattaacacttgtatgaatgatcagaaggataagttgtggccgatgttgacaaagctagggatcaccatgaaatca |
28687274 |
T |
|
| Q |
515 |
gaagagaaggacctgatgggtaagccattgatgaaacgtgttatgcagacctggttgccagcaagtactgccctacttgaaatgatgatctttcatcttc |
614 |
Q |
| |
|
|| ||||||||| ||||||||||||| |||||||||||||| |||||||| ||| | |||||||| ||||| || ||||||||||||||||||||||| | |
|
|
| T |
28687275 |
gaggagaaggacttgatgggtaagcctttgatgaaacgtgtcatgcagacatggctcccagcaagcactgcacttcttgaaatgatgatctttcatctcc |
28687374 |
T |
|
| Q |
615 |
cctcaccatcaactgcccagaggtaccgtgttgagaatttgtatgagggcccccttgacgatcaatatgcaaatgccatccgaaactgtgatcctgaagg |
714 |
Q |
| |
|
|||| |||||||| || |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||| | ||| ||| |||||||||| |||||||| |
|
|
| T |
28687375 |
cctctccatcaacagctcagaggtatcgtgttgagaatttgtatgagggtccccttgatgatcagtatgctactgctatcagaaactgtgaccctgaagg |
28687474 |
T |
|
| Q |
715 |
acctctgatgctttatgtgtcaaagatgattccagcatctgataaaggaaggttttttgcttttggccgtgtgtttgccggtaaggtttc |
804 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||| |
|
|
| T |
28687475 |
acctctcatgctttatgtgtcaaagatgattcctgcttctgataaaggaaggttttttgcttttggtcgtgtattttctggtaaagtttc |
28687564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 15 - 804
Target Start/End: Original strand, 28793052 - 28793841
Alignment:
| Q |
15 |
ctgtgctgcgacaagctcttggagaaaggatcaggcctgttcttacagttaataagatggacaggtgcttccttgagctccaggttgatggagaggaggc |
114 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28793052 |
ctgtgctgcgacaggctcttggagaaaggatcaggccggttctgacagttaacaagatggacagatgcttccttgagctccaggttgatggagaggaggc |
28793151 |
T |
|
| Q |
115 |
gtaccagaccttttcaagggtgattgagaatgctaatgtgatcatggctacatatgaagatccacttcttggtgatgttcaggtgtatccagagaaagga |
214 |
Q |
| |
|
|| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||| ||||||||| |
|
|
| T |
28793152 |
ttatcagaccttctcaagagttattgagaatgctaatgtgatcatggctacatatgaagatccattgctcggtgatgttcaagtgtatcccgagaaagga |
28793251 |
T |
|
| Q |
215 |
acagttgctttttctgctggtttgcatggttgggcttttactctgaccaactttgccaaaatgtatgcctcaaaatttggcgttgatgagtccaagatga |
314 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||| | ||||||| |
|
|
| T |
28793252 |
acagttgctttctctgctggtttgcacggttgggcttttactctgaccaactttgcaaagatgtatgcctctaaatttggtgttgacgagacaaagatga |
28793351 |
T |
|
| Q |
315 |
tggagaggctctggggtgaaaatttcttcgatcctgccacnnnnnnntggaccaccaagaatactggttcagcttcttgcaagcgtgggtttgttcagtt |
414 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28793352 |
tggagaggctttggggtgaaaatttctttgatcctgccactaagaaatggaccaccaagaacactggttcagctacttgcaagcgtgggtttgttcagtt |
28793451 |
T |
|
| Q |
415 |
ctgttatgagcctatcaagcagatcatcaacacttgtatgaatgatcagaaggataagttgtggcctatgcttacaaagctaggggtcaccatgaagtct |
514 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||| | |||||||||||| |||||||||| || |
|
|
| T |
28793452 |
ctgttatgagcctatcaagcaggtcattaacacttgtatgaatgatcagaaggataagttgtggccgatgttgacaaagctagggatcaccatgaaatca |
28793551 |
T |
|
| Q |
515 |
gaagagaaggacctgatgggtaagccattgatgaaacgtgttatgcagacctggttgccagcaagtactgccctacttgaaatgatgatctttcatcttc |
614 |
Q |
| |
|
|| ||||||||| ||||||||||||| |||||||||||||| |||||||| ||| | |||||||| ||||| || ||||||||||||||||||||||| | |
|
|
| T |
28793552 |
gaggagaaggacttgatgggtaagcctttgatgaaacgtgtcatgcagacatggctcccagcaagcactgcacttcttgaaatgatgatctttcatctcc |
28793651 |
T |
|
| Q |
615 |
cctcaccatcaactgcccagaggtaccgtgttgagaatttgtatgagggcccccttgacgatcaatatgcaaatgccatccgaaactgtgatcctgaagg |
714 |
Q |
| |
|
|||| |||||||| || |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| | ||| ||| |||||||||| |||||||| |
|
|
| T |
28793652 |
cctctccatcaacagctcagaggtatcgtgttgagaatttgtatgagggtccccttgatgatcaatatgctactgctatcagaaactgtgaccctgaagg |
28793751 |
T |
|
| Q |
715 |
acctctgatgctttatgtgtcaaagatgattccagcatctgataaaggaaggttttttgcttttggccgtgtgtttgccggtaaggtttc |
804 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||| | ||||| ||||| |
|
|
| T |
28793752 |
acctctcatgctttatgtgtcaaagatgattcccgcttctgataaaggaaggttttttgcttttggtcgtgtattttctggtaaagtttc |
28793841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 15 - 804
Target Start/End: Original strand, 28798154 - 28798943
Alignment:
| Q |
15 |
ctgtgctgcgacaagctcttggagaaaggatcaggcctgttcttacagttaataagatggacaggtgcttccttgagctccaggttgatggagaggaggc |
114 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| | |||||| | || ||||| || ||||| || || || |||||||| || |||||| ||| ||||| |
|
|
| T |
28798154 |
ctgtgctgagacaagcacttggagaaaggattaaacctgttttaactgttaacaaaatggatagatgttttcttgagcttcatcttgatgcagaagaggc |
28798253 |
T |
|
| Q |
115 |
gtaccagaccttttcaagggtgattgagaatgctaatgtgatcatggctacatatgaagatccacttcttggtgatgttcaggtgtatccagagaaagga |
214 |
Q |
| |
|
||| ||| || ||| || ||||||| || ||||| ||||||| |||||||||||| | | ||||||||||||||||| || || || || ||| |
|
|
| T |
28798254 |
atactcgacgattcaaagagtcattgagagtgtgaatgttgtcatggcaacatatgaagatgctttacttggtgatgttcaggtttaccctgaaaaggga |
28798353 |
T |
|
| Q |
215 |
acagttgctttttctgctggtttgcatggttgggcttttactctgaccaactttgccaaaatgtatgcctcaaaatttggcgttgatgagtccaagatga |
314 |
Q |
| |
|
|||||| |||||||||||||||| ||||| ||| |||||||||| ||||||||||| || |||||||| ||||| ||||| ||||||||| ||||||| |
|
|
| T |
28798354 |
acagtttctttttctgctggtttacatggatggtcttttactctcaccaactttgctaagatgtatgcttcaaagtttggagttgatgaggagaagatga |
28798453 |
T |
|
| Q |
315 |
tggagaggctctggggtgaaaatttcttcgatcctgccacnnnnnnntggaccaccaagaatactggttcagcttcttgcaagcgtgggtttgttcagtt |
414 |
Q |
| |
|
|| | ||||| ||||||||||||||||| || || | || ||||| | |||| | || | || |||||||||| || ||||| ||||| |
|
|
| T |
28798454 |
tgaataggctttggggtgaaaatttctttgactcttcaaccaaaaagtggactaacaagcacacatcgacgcctacttgcaagcgcggttttgtacagtt |
28798553 |
T |
|
| Q |
415 |
ctgttatgagcctatcaagcagatcatcaacacttgtatgaatgatcagaaggataagttgtggcctatgcttaca-aagctaggggtcaccatgaagtc |
513 |
Q |
| |
|
|||||||| || ||||||||||| || | ||||||||||||||||||||||||||||||||| ||| || || ||||| ||||| | ||||||| |
|
|
| T |
28798554 |
ttgttatgaaccaatcaagcagattattgaactttgtatgaatgatcagaaggataagttgtggccgatg-ttgcagaagcttggggttaatttgaagtc |
28798652 |
T |
|
| Q |
514 |
tgaagagaaggacctgatgggtaagccattgatgaaacgtgttatgcagacctggttgccagcaagtactgccctacttgaaatgatgatctttcatctt |
613 |
Q |
| |
|
|| ||||| || || || ||| | |||||||| ||||||||||||| ||| | ||||| |||| |||||| | || |||||||| ||||| ||| |
|
|
| T |
28798653 |
ggaggagaaagaattgtcaggaaaggctttgatgaagcgtgttatgcagagttggctcccagctagtagtgcccttttggagatgatgatttttcacctt |
28798752 |
T |
|
| Q |
614 |
ccctcaccatcaactgcccagaggtaccgtgttgagaatttgtatgagggcccccttgacgatcaatatgcaaatgccatccgaaactgtgatcctgaag |
713 |
Q |
| |
|
|| || || | | || || | ||| ||||| |||||||||||||||||||||||||| |||| ||||| ||| |||||||| ||||||||||||| |
|
|
| T |
28798753 |
ccttctcctaccaaggctcaaaagtatcgtgtcgagaatttgtatgagggcccccttgatgatccttatgcttctgcaatccgaaattgtgatcctgaag |
28798852 |
T |
|
| Q |
714 |
gacctctgatgctttatgtgtcaaagatgattccagcatctgataaaggaaggttttttgcttttggccgtgtgtttgccggtaaggtttc |
804 |
Q |
| |
|
||||| | ||||||||||| |||||||||||||| ||||||||||| || ||||||| |||||| || ||||| ||| | ||||||||||| |
|
|
| T |
28798853 |
gacctttaatgctttatgtctcaaagatgattcctgcatctgataagggtaggttttatgctttcggtcgtgttttttcaggtaaggtttc |
28798943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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