View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7124_low_4 (Length: 246)
Name: NF7124_low_4
Description: NF7124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7124_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 6184432 - 6184637
Alignment:
| Q |
22 |
ctctaaacaatcattatggcttattcttcataatctattctaagtcttcttcataagcaaaaaatcaagaagtggtttatctgaaacaggtatcaacttc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6184432 |
ctctaaacaatcattatggcttattcttcataatctattctaagtcttcttcataagcaaaaaatcaagaagtggtttatctgaaacaggtatcaacttc |
6184531 |
T |
|
| Q |
122 |
acaagaaaaccaattggccaagaaacagcaccaaaaccaatacaaataatccattctctccaattcaacctttctgtaccagcaaacttcttcaaaaact |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6184532 |
acaagaaaaccaattggccaagaaacagcaccaaaaccaatacaaataatccattctctccaattcaacctttctgtaccagcaaacttcttcaaaaact |
6184631 |
T |
|
| Q |
222 |
caacca |
227 |
Q |
| |
|
|||||| |
|
|
| T |
6184632 |
caacca |
6184637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 79 - 227
Target Start/End: Original strand, 4235365 - 4235513
Alignment:
| Q |
79 |
caaaaaatcaagaagtggtttatctgaaacaggtatcaacttcacaagaaaaccaattggccaagaaacagcaccaaaaccaatacaaataatccattct |
178 |
Q |
| |
|
|||||||||||| | ||||| ||||| || ||||| |||||||| | ||| ||||||||||||||||||||| ||||||||||||||| |||||| ||| |
|
|
| T |
4235365 |
caaaaaatcaagtaaaggtttgtctgagactggtataaacttcaccacaaatccaattggccaagaaacagcagcaaaaccaatacaaacaatccactct |
4235464 |
T |
|
| Q |
179 |
ctccaattcaacctttctgtaccagcaaacttcttcaaaaactcaacca |
227 |
Q |
| |
|
|||||||||||||| || ||| ||||||||| |||||||||||||||| |
|
|
| T |
4235465 |
ctccaattcaacctctcagtattagcaaactttttcaaaaactcaacca |
4235513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University