View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7125_low_6 (Length: 246)
Name: NF7125_low_6
Description: NF7125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7125_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 246
Target Start/End: Original strand, 43395741 - 43395997
Alignment:
| Q |
2 |
cagaaggaatcagtgatgagatactatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcc |
101 |
Q |
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| T |
43395741 |
cagaaggaatcagtgatgagatactatcaaaaacagcaaaacacacccgcaacaaatcagacacatttgcacaaccttcatcagatggggatggatctcc |
43395840 |
T |
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| Q |
102 |
tgcaactgcagtacacaaatggttttccaacatcctcaaaccc------------aacaataacaataacaatagccccagtaacacgccaccaccttct |
189 |
Q |
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| T |
43395841 |
tgcaactgcagtacacaaatggttttccaacatcctcaaacccaacaataacaataacaataacaataacaatagcccaagtaacacgccaccaccttct |
43395940 |
T |
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| Q |
190 |
ccagattctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatcttca |
246 |
Q |
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| T |
43395941 |
ccagattctctccctccgcgtcagccacatcctcgaaaatcccgcttccaatcttca |
43395997 |
T |
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