View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7126_high_1 (Length: 1638)
Name: NF7126_high_1
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 1542; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 1542; E-Value: 0
Query Start/End: Original strand, 20 - 1625
Target Start/End: Complemental strand, 41532897 - 41531292
Alignment:
| Q |
20 |
ggccaaagctggaaggaaggaacctttttggccagctattgttattgatcctttgaaacaggcacctgagctggtcttgaggtctgttataatcgatgct |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41532897 |
ggccaaagctggaaggaaggaacctttttggccagctattgttattgatcctttgaaacaggcacctgagctggtcttgaggtctgttataatcgatgct |
41532798 |
T |
|
| Q |
120 |
gcctgtgtcatgtttcttggcaatgcagggaatgaaaatcaaagggtatgtacattatcaaatatttgaatatggattatttactatatagagcttcttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41532797 |
gcctgtgtcatgtttcttggcaatgcagggaatgaaaatcaaagggtatgtacattatcaaatatttgaatatggattatttactatatagagcttcttt |
41532698 |
T |
|
| Q |
220 |
gttatataagaaattaataattgcctatttattgtggtttgattatttgagtaggactatgcatgggtgaagcatggcatgatctttccatttatggatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41532697 |
gttatataagaaattaataattgcctatttattgtggtttgattatttgagtaggactatgcatgggtgaagcatggcatgatctttccatttatggatt |
41532598 |
T |
|
| Q |
320 |
atgtcgacaggtgtgaagttgtcattggttattgtttccattgtttgtattgttttacttttcggaagaaactttgcttactaggattaatgatgttctt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
41532597 |
atgtcgacaggtgtgaagttgtcattggttattgtttccattgtttgtattgttttacttttcggaagaaactttgcttagtaggattaatgatgttctt |
41532498 |
T |
|
| Q |
420 |
tggattaggtttcaagagcagcctgaattgagtaactatagtccctctgacttccaaatggcaatagaggaggcatttttggcagaccaaggctttacag |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41532497 |
tggattaggtttcaagagcagcctgaattgagtaactatagtccctctgacttccaaatggcaatagaggaggcatttttggcagaccaaggctttacag |
41532398 |
T |
|
| Q |
520 |
agaagttgatggatgatataaatgctgcagctggtgacactggttatgatgatactattctgaaatcctccttgcaggaagtccgtggttcaaaccagta |
619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
41532397 |
agaagttgatggatgatataaatgctgcagctggtgacactggttatgatgatactattctgaaatcctccttgcacgaagtccgtggttcaaaccagta |
41532298 |
T |
|
| Q |
620 |
tggaggagcaggaaagcattttcttaaacaggtaagtcacttcatctttatttatggttttgattatgtaattattgcttcataaaggtttgaatgatgt |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
41532297 |
tggaggagcaggaaagcattttcttaaacaggtaagtcacttcatctttatttatggttttgattatgtaattattgcttcataaagttttgaatgatgt |
41532198 |
T |
|
| Q |
720 |
tgaagtctagtcatgtttgatggtacattaattggaattctccgtgcaggatttatttgataagaaagactcaagatcatgtgaagcctgtggattggct |
819 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41532197 |
tgaagtctggtcatgtttgatggtacattaattggaattctctgtgcaggatttatttgataagaaagactcaagatcatgtgaagcctgtggattggct |
41532098 |
T |
|
| Q |
820 |
cttccttacaagatgtcaaagaaaattaagggtttgactcctaatggtcaactcctatgtaaaacatgtacaagggttagtatatcttgcctttttcttc |
919 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41532097 |
cttccttacaagatgtcaaagaaaattaagggtttgactcctaatggtcaactcctatgtaaaacatgtacaagggttagtatatcttgcctttttcttc |
41531998 |
T |
|
| Q |
920 |
caataacttatatttaagtctgcaatgaaaatgttataattgaagttttgtgtttgttttgaaactctgtattttgtagcctttgaagaaatttattctt |
1019 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531997 |
caataacttatatttaagtctgcaatgaaaatgttataattgaagttttgtgtttgttttgaaactctgtattttgtagcctttgaagaaatttattctt |
41531898 |
T |
|
| Q |
1020 |
agcagttaagaaagttttgtattcgttttcaaaattgcatatttatagtctctgaagtcatttagttttggcagttaacgaaatccaaacattattgtgg |
1119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531897 |
agcagttaagaaagttttgtattcgttttcaaaattgcatatttatagtctctgaagtcatttagttttggcagttaacgaaatccaaacattattgtgg |
41531798 |
T |
|
| Q |
1120 |
catatgcaagaaagtatcaaatcattcggatagtggaagctgggtgagttagttgaattccgtaactaatcaaggctannnnnnnnctgcccgaagactg |
1219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||| |
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|
| T |
41531797 |
catatgcaagaaagtatcaaatcattcggatagtggaagctgggtgagttagttgaattccgtaactaattaaggcaattttttttctgcccgaagactg |
41531698 |
T |
|
| Q |
1220 |
ttgttttttgtagtattaattcgtttgacctttggggtgttccctcggaatcaggtacgctgtgatggatgtaaagtgtgggtgcatgccgaatgtgaca |
1319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531697 |
ttgttttttgtagtattaattcgtttgacctttggggtgttccctcggaatcaggtacgctgtgatggatgtaaagtgtgggtgcatgccgaatgtgaca |
41531598 |
T |
|
| Q |
1320 |
aaatttctagtaaccatttcaaggtccgttactcttaatatgtcaatattgtcacttctcagaattcaaagttcataaagtgacatttggtgttttattg |
1419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41531597 |
aaatttctagtaaccatttcaaggtccgttactcttaatatgtcaatattgtctcttctcagaattcaaagttcataaagtgacatttggtgttttattg |
41531498 |
T |
|
| Q |
1420 |
attggtatattctgtttctttgaaggatcttgaaaccaccgattatttctgccctacgtgcagagggaagtttgactttgagttatctgattcagaatac |
1519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41531497 |
attggtatattctgtttctttgaaggatcttgaaaccaccgattatttctgccctacgtgcagagggaagtttgactttgagttatctgattcagaatac |
41531398 |
T |
|
| Q |
1520 |
acaaagccaaaagtcaagtgagtctattatggttctttctttgtcttctccagtcctggttttgcaacttaagcttatgatttcatgtcaaattcttgtg |
1619 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
41531397 |
acaaagccaaaagtcaagtgagtctattatggttctttctttgtcttctccagtcctggttttgcaacttaagcttatgatttcatgtcaaattattgtg |
41531298 |
T |
|
| Q |
1620 |
atgtcc |
1625 |
Q |
| |
|
| |||| |
|
|
| T |
41531297 |
aagtcc |
41531292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 5e-29; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 5e-29
Query Start/End: Original strand, 808 - 962
Target Start/End: Original strand, 815677 - 815830
Alignment:
| Q |
808 |
tgtggattggctcttccttacaagatgtcaaagaaaattaagggtttgactcctaatggtcaactcctatgtaaaacatgtacaagggttagtatatctt |
907 |
Q |
| |
|
|||||||||| ||||||| ||| ||||||||||||| |||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||| |
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|
| T |
815677 |
tgtggattggaccttcctttcaatatgtcaaagaaaacaaaggatttgactcctggtggtcaactcctatgtaaaacatgtgcaagggtttgtataactt |
815776 |
T |
|
| Q |
908 |
gcctttttcttccaataacttatatttaagtctgcaatgaaaatgttataattga |
962 |
Q |
| |
|
| |||||||||| || || |||||||| | ||| |||| ||||||||||||||| |
|
|
| T |
815777 |
g-ctttttcttctaacaatttatatttctgcctgaaatggaaatgttataattga |
815830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 1267 - 1323
Target Start/End: Original strand, 816069 - 816125
Alignment:
| Q |
1267 |
gaatcaggtacgctgtgatggatgtaaagtgtgggtgcatgccgaatgtgacaaaat |
1323 |
Q |
| |
|
|||| |||| || ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
816069 |
gaattaggtccgttgtgatggatgtaaagtgtgggtgcatgccgaatgcgacaaaat |
816125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 1099 - 1170
Target Start/End: Original strand, 815901 - 815972
Alignment:
| Q |
1099 |
gaaatccaaacattattgtggcatatgcaagaaagtatcaaatcattcggatagtggaagctgggtgagtta |
1170 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||||| | ||||| |||||||| ||||| ||||||||||| |
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|
| T |
815901 |
gaaatcgaaacattattgcggcatatgtaagaaagtttggaatcaatcggatagcggaagttgggtgagtta |
815972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1425 - 1516
Target Start/End: Original strand, 816240 - 816330
Alignment:
| Q |
1425 |
tatattctgtttctttgaaggatcttgaaaccaccgattatttctgccctacgtgcagagggaagtttgactttgagttatctgattcagaa |
1516 |
Q |
| |
|
|||| |||||||||| | || |||||| || ||| ||||||||||||||| | |||| || ||||||| | ||||| ||||||||||||||| |
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|
| T |
816240 |
tataatctgtttctt-gtagaatcttggaagcactgattatttctgccctgcttgcaaagtgaagtttaattttgaattatctgattcagaa |
816330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 7e-16
Query Start/End: Original strand, 930 - 1038
Target Start/End: Complemental strand, 4928139 - 4928031
Alignment:
| Q |
930 |
tatttaagtctgcaatgaaaatgttataattgaagttttgtgtttgttttgaaactctgtattttgtagcctttgaagaaatttattcttagcagttaag |
1029 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| | |||||||||||||| ||||| || ||| ||||||| | |||||||| || ||| | |
|
|
| T |
4928139 |
tatttaagtctgcaatgaaaacattataattgaagttttatatttgttttgaaactatgtatgttttagattttgaagtcaattattctttgcggtttac |
4928040 |
T |
|
| Q |
1030 |
aaagttttg |
1038 |
Q |
| |
|
||||||||| |
|
|
| T |
4928039 |
aaagttttg |
4928031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000006
Query Start/End: Original strand, 427 - 489
Target Start/End: Original strand, 19933674 - 19933736
Alignment:
| Q |
427 |
ggtttcaagagcagcctgaattgagtaactatagtccctctgacttccaaatggcaatagagg |
489 |
Q |
| |
|
||||||||||| | |||||||||||||| | ||||||||||||| | ||||||||||||||| |
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|
| T |
19933674 |
ggtttcaagaggaacctgaattgagtaattgcagtccctctgactcctaaatggcaatagagg |
19933736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 1272 - 1344
Target Start/End: Complemental strand, 48485731 - 48485659
Alignment:
| Q |
1272 |
aggtacgctgtgatggatgtaaagtgtgggtgcatgccgaatgtgacaaaatttctagtaaccatttcaaggt |
1344 |
Q |
| |
|
||||| |||||||||| ||||| || ||||||||||| || |||||||||||||| || || | ||||||||| |
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| T |
48485731 |
aggtatgctgtgatggttgtaatgtttgggtgcatgctgagtgtgacaaaatttccagcaaacgtttcaaggt |
48485659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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