View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_high_10 (Length: 486)
Name: NF7126_high_10
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 30902835 - 30902424
Alignment:
| Q |
19 |
ggttacccgttattttcactccttttgcgaaagaagataaagttattaaggatagtagggattttaaggtgaaattttcagcttcttcaatttgtgtaca |
118 |
Q |
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| T |
30902835 |
ggttacccgttatttttactccttttgcgaaagaagataaagttattaaggatagtagggattttaaggtgaaattttcagcttcttcaatttgtgtaca |
30902736 |
T |
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| Q |
119 |
atccactgaatggaaattaggtgatagggatattaagagtggaagaagggttattatagctggaagtgatggtagttattttagaattgtgaaggctgaa |
218 |
Q |
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| T |
30902735 |
atccactgaatggaaattaggtgatagagatactaagagtggaagaagggttattatagctggaagtgatggtagttattttagaattgtgaaggctgaa |
30902636 |
T |
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| Q |
219 |
tttgaaggtgtttataatattaggttttgtcccacagatacatgttccttttgtagatttgattgtggttttgttggtggtttacgtgagaatgggaaga |
318 |
Q |
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| T |
30902635 |
tttgaaggtgtttataatattaggttttgtcccacggatacatgttccttttgtagatttgattgtggttttgttggtggtttacgtgagaatgggaaga |
30902536 |
T |
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| Q |
319 |
ttttattggctttggatggtggtgttctcccagttgtgtttgtgagagcataatgtgttcatattggatgtagatcttgcttgtgtttgtagtactattt |
418 |
Q |
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| T |
30902535 |
ttttattggctttggatggtggtgttctcccagttgtgtttgtgagagcataatgtgtttatattggatgtagatcttgcttgtgtttgtagtactattt |
30902436 |
T |
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| Q |
419 |
aagtttgtgttt |
430 |
Q |
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| T |
30902435 |
aagtttgtgttt |
30902424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 74 - 212
Target Start/End: Complemental strand, 30872543 - 30872405
Alignment:
| Q |
74 |
tagggattttaaggtgaaattttcagcttcttcaatttgtgtacaatccactgaatggaaattaggtgatagggatattaagagtggaagaagggttatt |
173 |
Q |
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| T |
30872543 |
tagggattttaaggtgaaattttcatcttcttcaagttgtggacaatctacggaatggaaattgggtgatagggacaataggagtggaaggaggcttatt |
30872444 |
T |
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| Q |
174 |
atagctggaagtgatggtagttattttagaattgtgaag |
212 |
Q |
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| T |
30872443 |
atagcggggagtgatggtaattcatttagaattttgaag |
30872405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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