View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_high_11 (Length: 409)
Name: NF7126_high_11
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 8457758 - 8458140
Alignment:
| Q |
18 |
atttcttacggcttgaacacggcgttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaatcgtgagataatgttgctaaaccaaattga |
117 |
Q |
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| T |
8457758 |
atttcttacggcttgaacacggcgttagtagataaatttttcatttgttttgctgtcatcaaaacatcaatcgtgagataatgtggctaaaccaaattga |
8457857 |
T |
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| Q |
118 |
ttcttacatattcaaagacttgaaaattagcatgcatatcaatgttcnnnnnnnnacgcaagaattgaaatcaagaactttagtgtaatttattttctta |
217 |
Q |
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| T |
8457858 |
ttcttacatattcaaggacttgaaaattaacatgcatatcaatgttcttttttttacgcaagaattgaaatcaagaactttagtgtaatttattttctta |
8457957 |
T |
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| Q |
218 |
ctactttatccacactttcaaaacactttcggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatctacgt |
317 |
Q |
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| T |
8457958 |
ctactttatccacactttcaaaacacttttggattctcttgtatcctcttttgatagctcaacttcaagacatgtctcacaagtccgcattgatctacgt |
8458057 |
T |
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| Q |
318 |
gtagtttctttcaacaagtagggtccaaaagtgctaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
400 |
Q |
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| T |
8458058 |
gtagtttctttcaacaagtagggtccaaaagtggtaaacaatgtgtgctcaacttttggcactaaaaggatcatatttcatct |
8458140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 32652169 - 32652123
Alignment:
| Q |
41 |
gttagtagacaaatttttcatttgttttgttgtcatcaaaacatcaa |
87 |
Q |
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| T |
32652169 |
gttagcagacaaattatttatttgttttgttatcatcaaaacatcaa |
32652123 |
T |
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