View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_high_12 (Length: 407)
Name: NF7126_high_12
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 33990400 - 33990006
Alignment:
| Q |
1 |
gcagcaggtgctctacaatcataaaacacagtaaacaacagttaggagggtgcagataccaaaattggttcaaccacagttctcaaaaatgtcaactgtt |
100 |
Q |
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| T |
33990400 |
gcagcaggtgctctacaatcataaaacatagtaaacaacagttaggagggtgcagataccaaaattggttcaaccacagttctcaaaaatgtcaactgtt |
33990301 |
T |
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| Q |
101 |
tttatataatctgcaagatgaaatatttgcacacnnnnnnngatcatagatagagctaggaaaatgtgaagtatatataataccttttgcatgtttggta |
200 |
Q |
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| T |
33990300 |
tttgtataatctgcaagatgaaatatttgcacacaaaaaaagatcatagatagagctaggaaaatgtgaagtatatataataccttttgcatgtttggta |
33990201 |
T |
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| Q |
201 |
ggagcaatagctggggatgagtatgtaagaattgcattcaactgcgccatattagtttttgctgtatattttcagtcactcactcaccacctttttatta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990200 |
ggagcaatagctggggatgagtatgtaagaattgcattcaactgcgccatattagtttttgctgtatattttcagtcactcactcaccacctttttatta |
33990101 |
T |
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| Q |
301 |
tggttgtttggaccctcttgagatgctactgtttctcttctcgtgcatactgtttcagtttctgtttctgtttctgtcaggttataataattatgtaatg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33990100 |
tggttgtttggaccctcttgagatgctactgtttctcttctcgtgcatactg------------tttctgtttctgtcaggttataataattatgtaatg |
33990013 |
T |
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