View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7126_high_14 (Length: 376)

Name: NF7126_high_14
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7126_high_14
NF7126_high_14
[»] chr6 (9 HSPs)
chr6 (16-164)||(23586494-23586642)
chr6 (237-367)||(23582832-23582962)
chr6 (237-367)||(23586715-23586845)
chr6 (34-135)||(23582650-23582751)
chr6 (256-367)||(23391074-23391188)
chr6 (237-367)||(23251621-23251757)
chr6 (237-353)||(23247209-23247328)
chr6 (302-343)||(23283296-23283337)
chr6 (302-367)||(23289636-23289701)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 23586494 - 23586642
Alignment:
Q  16 gattttacctccttcaatactttatgcttcattagtgactacattcaaagaaaagaatacaaaaagaattttctttccaatttaaacctatcaagaatcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586494 gattttacctccttcaatactttatgcttcattagtgactacattcaaagaaaagaatacaaaaagaattttctttccaatttaaacctatcaagaatcc 23586593  T
Q  116 gtactactactaaaaaggtttgtactacagacaatttccattctacaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586594 gtactactactaaaaaggtttgtactacagacaatttccattctacaat 23586642  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 237 - 367
Target Start/End: Original strand, 23582832 - 23582962
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 336  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23582832 tccatagtgatactttttcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 23582931  T
Q  337 catctcttgcatgttcatcactccttcttct 367  Q
    |||||||||||||||||||||||||||||||    
T  23582932 catctcttgcatgttcatcactccttcttct 23582962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 237 - 367
Target Start/End: Original strand, 23586715 - 23586845
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 336  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586715 tccatagtgatactttttcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 23586814  T
Q  337 catctcttgcatgttcatcactccttcttct 367  Q
    |||||||||||||||||||||||||||||||    
T  23586815 catctcttgcatgttcatcactccttcttct 23586845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 23582650 - 23582751
Alignment:
Q  34 actttatgcttcattagtgactacattcaaagaaaagaatacaaaaagaattttctttccaatttaaacctatcaagaatccgtactactactaaaaagg 133  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||| ||||||||    
T  23582650 actttatgcttcattagtgactacatacaaagaaaagaatacaaaaagaatttcctttccaatttcaaactataaagaatccgtactactattaaaaagg 23582749  T
Q  134 tt 135  Q
    ||    
T  23582750 tt 23582751  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 367
Target Start/End: Original strand, 23391074 - 23391188
Alignment:
Q  256 atcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgttc 352  Q
    ||||||||||||||   ||| ||||| || ||| |||| ||||||  |||||||||||||||||||||| |||||||| ||| ||| |||| ||||||||    
T  23391074 atcttgaaagtcttgaacatgaatattttcatattcattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatgttc 23391173  T
Q  353 atcactccttcttct 367  Q
    ||||| || ||||||    
T  23391174 atcaccccctcttct 23391188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 367
Target Start/End: Original strand, 23251621 - 23251757
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtcttc---attaatatattgatact---cataataccccaagctatgtgtaggagacattagcgccatatt 330  Q
    ||||||||||||| || ||||||||||||||||    || ||||| || |||||   ||| |||||| |||||||||||||| |||||||| ||||||||    
T  23251621 tccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgccatatt 23251720  T
Q  331 actccacatctcttgcatgttcatcactccttcttct 367  Q
     ||||||| |||| |||| |||| |||| | ||||||    
T  23251721 cctccacaactctggcatattcaacacttcctcttct 23251757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 353
Target Start/End: Original strand, 23247209 - 23247328
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattact 333  Q
    ||||||||||||| || ||||||||||| ||||   ||| |||||  | |||||||| |||| | |||||||||||||| ||||| | ||||||||| ||    
T  23247209 tccatagtgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatactcatgatactcaaagctatgtgtaggtgacatcaacgccatattcct 23247308  T
Q  334 ccacatctcttgcatgttca 353  Q
    ||||| |||| |||| ||||    
T  23247309 ccacaactctggcatattca 23247328  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 23283296 - 23283337
Alignment:
Q  302 ctatgtgtaggagacattagcgccatattactccacatctct 343  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  23283296 ctatgtgtaggggacattaacgccatattcctccacatctct 23283337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 23289636 - 23289701
Alignment:
Q  302 ctatgtgtaggagacattagcgccatattactccacatctcttgcatgttcatcactccttcttct 367  Q
    ||||||||||| |||||||| ||||||||  |||||| ||||||||| |||| |||| | ||||||    
T  23289636 ctatgtgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttcctcttct 23289701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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