View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_high_17 (Length: 342)
Name: NF7126_high_17
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 42662966 - 42663275
Alignment:
| Q |
18 |
tactcataaccatggcatccatttttactcctatttctttggtatctggtggaaggaagggactgaaaatgaagattcgggttggccatatctggtgcat |
117 |
Q |
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| T |
42662966 |
tactcataaccatggcatccatttttactccaatttctttggtatctggtggaaggaagggactgaaaatgaagattcgggttggccatatctgatgcat |
42663065 |
T |
|
| Q |
118 |
tcctgacaaagagaatccaaacgagatcagctgcatgaaccttcttctggtggatgagcagttatgtctgtcgatatcattcaggtgtaaatagaatgag |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42663066 |
tcctgacaaagagaatcctaacgagatcagctgcatgaaccttcttctggtggatgagacgttatgtctgtcgatatcattcaggtgtaaatagaatgag |
42663165 |
T |
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| Q |
218 |
aagttattataagattcag---nnnnnnnnnnaatgtttattttgaaattttatatggattgtgtcctgcctttcatcaatcaggagaaataattatttc |
314 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42663166 |
aagttattataagattcagtttttttttttttaatgtttattttgaaattttatatggattgtgtcctgcctttcatcaatcaggagaaataattatttc |
42663265 |
T |
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| Q |
315 |
gtacattatg |
324 |
Q |
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|||||||||| |
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| T |
42663266 |
gtacattatg |
42663275 |
T |
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