View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_high_27 (Length: 250)
Name: NF7126_high_27
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 6 - 247
Target Start/End: Original strand, 27781761 - 27782002
Alignment:
| Q |
6 |
ctatattattctgcggggatcaaaccttaatacttctgctcaaaagtttagtgtgtgcactgtgttgtcaactgatagccacacttattgagtattagat |
105 |
Q |
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| T |
27781761 |
ctatattgttctgtggggatcaaaccttaatacttctgctcaaaagtttagtgtgtgcactgtgttgtcaactgatagccacacttattgagtattagat |
27781860 |
T |
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| Q |
106 |
attgctagttgttcaaaaagtagaagacattaacttacctgcatatgtggtgtcaatcctagttcccgcaactgcaaaataataccagttgctagcgaat |
205 |
Q |
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| T |
27781861 |
atttctagttgttcaaaaagtagaagacattaacttacctgcatatgtggtgtcaatcctagttcccgcaactgcaaaataataccagttgctagcgaat |
27781960 |
T |
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| Q |
206 |
ccttattagtcatgttttctgcctgagtggaaaaacctaagc |
247 |
Q |
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| T |
27781961 |
ccttattagtcatgttttctgcctgagtggaaaaacctaagc |
27782002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 27785709 - 27785792
Alignment:
| Q |
141 |
tacctgcatatgtggtgtcaatcctagttcccgcaactgcaaaataataccagttgctagcgaatccttattagtcatgttttc |
224 |
Q |
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| T |
27785709 |
tacctgcacatgtggtgtcaaacttagtgcccccaactgcaaactgatatcagttgctagtgaatctggattagtcaagttttc |
27785792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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