View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7126_high_33 (Length: 208)

Name: NF7126_high_33
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7126_high_33
NF7126_high_33
[»] chr5 (6 HSPs)
chr5 (5-192)||(41714296-41714483)
chr5 (5-77)||(42128120-42128192)
chr5 (5-174)||(34241339-34241513)
chr5 (5-77)||(42122725-42122797)
chr5 (5-102)||(34233566-34233663)
chr5 (5-77)||(42116974-42117046)
[»] chr4 (1 HSPs)
chr4 (5-77)||(11117382-11117454)
[»] chr2 (2 HSPs)
chr2 (5-77)||(11995177-11995249)
chr2 (5-77)||(12247681-12247753)
[»] chr6 (1 HSPs)
chr6 (137-192)||(25523940-25523995)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 5 - 192
Target Start/End: Original strand, 41714296 - 41714483
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcgaatggtgcaaatgtcgtagttttaga 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41714296 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcgaatggtgcaaatgtcgtagttttaga 41714395  T
Q  105 attgtgattttttcctctactgtgttagttccttgtgtttaaaataagtttgatgtgagtgtgacaatcttgtcattcgtatttgatc 192  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41714396 attgtgattttttcctctactttgttagttccttgtgtttaaaataagtttgatgtgagtgtgacaatcttgtcattcgtatttgatc 41714483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 42128192 - 42128120
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc 77  Q
    |||||||||||||||||||||| ||||||| ||||||||||| |||||||| |  ||||||||||||||||||    
T  42128192 tttggtggtcagcctaagagaagagtgacaaggagaacaagagtgaggagggcacatggttcaaccatgaatc 42128120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 34241339 - 34241513
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcgaatggtgcaaatgtcgtagttttaga 104  Q
    ||||||||||| |||||||||| |||||   ||||||||  | ||||||| | ||||||| ||||||||||||  |||||||||||||| ||||||||      
T  34241339 tttggtggtcatcctaagagaagagtgaataggagaacataagtgaggagaaacaatggtccaaccatgaatcagatggtgcaaatgtcatagttttatt 34241438  T
Q  105 attgtgattttttcctcta--ctgtgttagttcct--tgtgtttaaaataag-tttgatgtgagtgtgacaatct 174  Q
    ||| || || ||| |||||   ||||||||||  |  | ||||||||||||| |||||||||||| |||||||||    
T  34241439 attctggttattttctctattgtgtgttagtttttactctgtttaaaataagttttgatgtgagtttgacaatct 34241513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 42122797 - 42122725
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc 77  Q
    |||||||||| ||||||||||| ||||||| ||||||||||| |||||||| |  ||||||||||||||||||    
T  42122797 tttggtggtccgcctaagagaagagtgacaaggagaacaagagtgaggagggcacatggttcaaccatgaatc 42122725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 34233566 - 34233663
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatcgaatggtgcaaatgtcgtagtttta 102  Q
    ||||||||||| |||||||||| |||||   ||||||||  | ||||||| | ||||||| ||||||||||||  |||||||||||||| ||||||||    
T  34233566 tttggtggtcatcctaagagaagagtgaataggagaacataagtgaggagaaacaatggtccaaccatgaatcagatggtgcaaatgtcatagtttta 34233663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 42117046 - 42116974
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc 77  Q
    |||||||||||||||||||||| ||||| | | |||||||||||||| |||| | ||||| ||||||||||||    
T  42117046 tttggtggtcagcctaagagaagagtgaaaagaagaacaagaatgagaaggaaccatggtacaaccatgaatc 42116974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 11117454 - 11117382
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc 77  Q
    |||||||||||||||||||||| ||||||| ||||||||||| |||||||  |  ||||||||| ||||||||    
T  11117454 tttggtggtcagcctaagagaagagtgacaaggagaacaagagtgaggagcgcacatggttcaaacatgaatc 11117382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 11995177 - 11995249
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc 77  Q
    ||||||||||||||||| |||| ||||| | ||||||||||| |||| |||| | ||||| ||||||||||||    
T  11995177 tttggtggtcagcctaaaagaagagtgaaaaggagaacaagagtgagtaggaaccatggtgcaaccatgaatc 11995249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 12247753 - 12247681
Alignment:
Q  5 tttggtggtcagcctaagagaatagtgacagggagaacaagaatgaggaggaccaatggttcaaccatgaatc 77  Q
    ||||||||||||||||| |||| ||||| | ||||||||||| |||| |||| | ||||| ||||||||||||    
T  12247753 tttggtggtcagcctaaaagaagagtgaaaaggagaacaagagtgagtaggaaccatggtgcaaccatgaatc 12247681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 25523940 - 25523995
Alignment:
Q  137 ttgtgtttaaaataagtttgatgtgagtgtgacaatcttgtcattcgtatttgatc 192  Q
    |||||||||||||||| ||||||| |||| |||||||| |||| || |||||||||    
T  25523940 ttgtgtttaaaataagcttgatgttagtgcgacaatctagtcactcttatttgatc 25523995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University