View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_high_6 (Length: 607)
Name: NF7126_high_6
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 490
Target Start/End: Complemental strand, 11314285 - 11313781
Alignment:
| Q |
1 |
caaagcaagtaagctgttatggccgttaaaagtaatagagccgtacaagtttccattttttgaacacaccaaccaaacagtcttaaacttgttaactttg |
100 |
Q |
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| T |
11314285 |
caaagcaagtaagctgttatggccgttaaaagtaatagagccgtacaagtttccattttttgaacacaccaaccaaacagtcttaaacttgttaactttg |
11314186 |
T |
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| Q |
101 |
acgtgcagtttaatgttgtcacacaacccaagaatcaaaagctcaaccctacaagaaaatttaatcaaaactttagtctttttacataattaaaaaatgg |
200 |
Q |
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| T |
11314185 |
atgtgcagtttaatgttgtcacacaacccaagaatcaaaagctcaaccctacaagaaaatttaatcaaaactttagtctttttacataattaaaaaatga |
11314086 |
T |
|
| Q |
201 |
ggtgataatattgtcacaacccaaaattcaaaagcttaaaactacaagataattcaatcaaaagtctaannnnnnnncattcataaaagnnnnnnnntga |
300 |
Q |
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| T |
11314085 |
ggtgataatattgtcacaacccaaaattcaaaagcttaaaactacaagataattcaatcaaaagtctaattttttttcattcataaaagaaaaaaaatga |
11313986 |
T |
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| Q |
301 |
ggtatagtataatgttataacaatccaagaatcaaaagctcaagcatacaagaaaatgaatggtaactagtaatgttttcaccccaataatcaaaatctc |
400 |
Q |
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| T |
11313985 |
ggtatagtataatgttataacaatccaagaatcaaaagctcaagcatacaagaaaatgaatggtaactagtaatgttttcaccccaataatcaaaatctc |
11313886 |
T |
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| Q |
401 |
aagcctaa---------------tttttcttccataaatacaaaaatggggtatagtaataatggtgtcatcccatgaatcaatatcttaagcctactag |
485 |
Q |
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| T |
11313885 |
aagcctaatagaaagtttaatattttttcttccataaatacaaaaatggggtatagtaataatggtgtcatcccatgaatcaatatcttaagcctactag |
11313786 |
T |
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| Q |
486 |
aaagt |
490 |
Q |
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| T |
11313785 |
aaagt |
11313781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 516 - 588
Target Start/End: Complemental strand, 11313735 - 11313663
Alignment:
| Q |
516 |
gtgcatgggaaaatgcatgagaaagtaatatatgtttacctttcaagaaataatggttcaaggttgagctagt |
588 |
Q |
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| T |
11313735 |
gtgcatgggaaaatgcatgagaaagtaatatatgtttacctttcaagaaataatggttcaaggttgagctagt |
11313663 |
T |
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