View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_11 (Length: 446)
Name: NF7126_low_11
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 18642034 - 18642451
Alignment:
| Q |
13 |
acctgtgatttacaattagcaaactgtatccaactgaagatagaaacgcccaagaatttgagaagtgtgacgaagagacgtcttgtggccctccatgaag |
112 |
Q |
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| T |
18642034 |
acctgtaatttacaattagcaaactgtatccaactgaagatagaaacgcccaagaatttgagaagtgtgacgaagagacgtcttgtggccctccatgaag |
18642133 |
T |
|
| Q |
113 |
gatcacaattaatggatcaaatgcatccttgttcttggttttggatgagacaaatatagcttcaaaaggtttagcagcacctgaaataaaacttaggata |
212 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18642134 |
gatcacaattaatggatcaaatacatccttgttcttggttttggatgagacaaatatagcttcaaaaggtttagcagcacctgaaataaaacttaggata |
18642233 |
T |
|
| Q |
213 |
aacacatattagacagtcggttaagtgatcccaaaaactcgattaagatttacgcatagctatcactatataatgtgttggatttgttatagaagtatgt |
312 |
Q |
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| T |
18642234 |
aacacatattagacagtcggttaagtgatcccaaaaactcgattaagatttacgcatagctatcactatataatgtgttggatttgttatagaagtatgt |
18642333 |
T |
|
| Q |
313 |
ggttaccaaataaatatttgcactgtatgaaaagattttttaatcaatttaacgtgtccaatgctctcaattgtaacataacaaacaactcatgagattc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18642334 |
ggttaccaaataaatatttgcactgtatgaaaagattttttaatcaatttaacgtgtccaatgctctcaattgtaacataacaaacaactcatgagattc |
18642433 |
T |
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| Q |
413 |
ttatatgaattctatagt |
430 |
Q |
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| T |
18642434 |
ttatatgaattctatagt |
18642451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 199
Target Start/End: Original strand, 18632088 - 18632191
Alignment:
| Q |
96 |
tgtggccctccatgaaggatcacaattaatggatcaaatgcatccttgttcttggttttggatgagacaaatatagcttcaaaaggtttagcagcacctg |
195 |
Q |
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||||| || |||||||||| |||||||| ||||||| |||| || | ||||||||||| ||||| |||||||||| |||| |||||||| || ||||| |
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| T |
18632088 |
tgtggtcccccatgaaggaccacaattagtggatcacatgcgtcacttttcttggtttttgatgacacaaatatagattcataaggtttacaagaacctg |
18632187 |
T |
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| Q |
196 |
aaat |
199 |
Q |
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|||| |
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| T |
18632188 |
aaat |
18632191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 96 - 199
Target Start/End: Complemental strand, 15091819 - 15091716
Alignment:
| Q |
96 |
tgtggccctccatgaaggatcacaattaatggatcaaatgcatccttgttcttggttttggatgagacaaatatagcttcaaaaggtttagcagcacctg |
195 |
Q |
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||||| || |||||||||| |||||||| ||||||| |||| || | ||||||||||| ||||| |||||||||| ||||||||||||| || ||||| |
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| T |
15091819 |
tgtggtcccccatgaaggaccacaattagtggatcacatgcgtcgcttttcttggtttttgatgacacaaatatagattcaaaaggtttacaagaacctg |
15091720 |
T |
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| Q |
196 |
aaat |
199 |
Q |
| |
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|||| |
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|
| T |
15091719 |
aaat |
15091716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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