View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7126_low_14 (Length: 396)
Name: NF7126_low_14
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_14 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 177 - 396
Target Start/End: Complemental strand, 3449621 - 3449400
Alignment:
| Q |
177 |
ttccaactacttcacttctctaaaaagagttttgttagcttcaag-ccctcttcaagttaatcacttttcaacttttgcttttgtatactctattttctt |
275 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3449621 |
ttccaaatacttcacttctctaaaaagagttttgttaacttcaagaccctcttcaagttaatcacttttcaacttttgcttttgtatactctattttctt |
3449522 |
T |
|
| Q |
276 |
gccttcatttgtgtaatcataactccaacaagtgaactgtcttgaaacttcattcactaatgatcttatttcaacagatatttcatcttcggttggtacc |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3449521 |
gccttcatttgtgtaatcataactccaacaagtgaactgtcttgaaacttcattcactaatgatcttatttcaacagatatttcatcttcggttggtacc |
3449422 |
T |
|
| Q |
376 |
a-ttgttgtcaaaatcccgact |
396 |
Q |
| |
|
| |||||||||||||||||||| |
|
|
| T |
3449421 |
atttgttgtcaaaatcccgact |
3449400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 3449803 - 3449638
Alignment:
| Q |
19 |
cccttaaccagtctctatgaacttttagactctttgcattctcaaagacttctctttgtatgaacaacgttttcttggcttcttatgaagcagctatatt |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3449803 |
cccttaactagtctctatgaacttttagactctttgcattctcaaagacttctcttggtatgaacaacgttttcttggcttcttatgaagcagctatatt |
3449704 |
T |
|
| Q |
119 |
agctagccctaacaccatttattagttcttctagctccttttttctatcgtcctaatattccaact |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3449703 |
agctagccctaacaccatttattagttcttctagctccttttttctatcctcctaatattccaact |
3449638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 177 - 374
Target Start/End: Original strand, 3463588 - 3463788
Alignment:
| Q |
177 |
ttccaactacttcacttctctaaaaagagttttgttagcttcaag-ccctcttcaagttaatcacttttcaac--ttttgcttttgtatactctattttc |
273 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
3463588 |
ttccaaatacttcacttctctaaaaagagttttgttagcttcaagaccctcttctagctcatcacttttcaacaatttggcttttgtatactctattttc |
3463687 |
T |
|
| Q |
274 |
ttgccttcatttgtgtaatcataactccaacaagtgaactgtcttgaaacttcattcactaatgatcttatttcaacagatatttcatcttcggttggta |
373 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||||| |||||||||||| ||||||| ||||||| |
|
|
| T |
3463688 |
ttgccttcatttgtgtaatcatgactccaacaagtgaactgtcttgaaacttctttaaccaatgatcttatatcaacagatattccatcttctgttggta |
3463787 |
T |
|
| Q |
374 |
c |
374 |
Q |
| |
|
| |
|
|
| T |
3463788 |
c |
3463788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 3463418 - 3463571
Alignment:
| Q |
30 |
tctctatgaacttttagactctttgcattctcaaagacttctct--ttgtatgaacaacgtt-ttcttggcttcttatgaagcagctatattagctagcc |
126 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||||| | ||||||||||||| |||||||||||||||||| | |
|
|
| T |
3463418 |
tctctttgaacttttagaatctttgcattctcaaagatttctctctttgtatgaacaaccatgttcttggcttcttgtgaagcagctatattagc----c |
3463513 |
T |
|
| Q |
127 |
ctaacaccatttattagttcttctagctccttttttctatcgtcctaatattccaact |
184 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| || ||| |||||||||||| |
|
|
| T |
3463514 |
ctaacaccatttattagttcttctaactccttttttctgtcctccaaatattccaact |
3463571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University