View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7126_low_16 (Length: 376)

Name: NF7126_low_16
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7126_low_16
NF7126_low_16
[»] chr6 (9 HSPs)
chr6 (16-164)||(23586494-23586642)
chr6 (237-367)||(23582832-23582962)
chr6 (237-367)||(23586715-23586845)
chr6 (34-135)||(23582650-23582751)
chr6 (256-367)||(23391074-23391188)
chr6 (237-367)||(23251621-23251757)
chr6 (237-353)||(23247209-23247328)
chr6 (302-343)||(23283296-23283337)
chr6 (302-367)||(23289636-23289701)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 23586494 - 23586642
Alignment:
Q  16 gattttacctccttcaatactttatgcttcattagtgactacattcaaagaaaagaatacaaaaagaattttctttccaatttaaacctatcaagaatcc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586494 gattttacctccttcaatactttatgcttcattagtgactacattcaaagaaaagaatacaaaaagaattttctttccaatttaaacctatcaagaatcc 23586593  T
Q  116 gtactactactaaaaaggtttgtactacagacaatttccattctacaat 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586594 gtactactactaaaaaggtttgtactacagacaatttccattctacaat 23586642  T

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Target: chr6; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 237 - 367
Target Start/End: Original strand, 23582832 - 23582962
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 336  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23582832 tccatagtgatactttttcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 23582931  T
Q  337 catctcttgcatgttcatcactccttcttct 367  Q
    |||||||||||||||||||||||||||||||    
T  23582932 catctcttgcatgttcatcactccttcttct 23582962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 237 - 367
Target Start/End: Original strand, 23586715 - 23586845
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 336  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23586715 tccatagtgatactttttcatcttgaaagtcttcattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactcca 23586814  T
Q  337 catctcttgcatgttcatcactccttcttct 367  Q
    |||||||||||||||||||||||||||||||    
T  23586815 catctcttgcatgttcatcactccttcttct 23586845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 34 - 135
Target Start/End: Original strand, 23582650 - 23582751
Alignment:
Q  34 actttatgcttcattagtgactacattcaaagaaaagaatacaaaaagaattttctttccaatttaaacctatcaagaatccgtactactactaaaaagg 133  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||| ||||||||    
T  23582650 actttatgcttcattagtgactacatacaaagaaaagaatacaaaaagaatttcctttccaatttcaaactataaagaatccgtactactattaaaaagg 23582749  T
Q  134 tt 135  Q
    ||    
T  23582750 tt 23582751  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 256 - 367
Target Start/End: Original strand, 23391074 - 23391188
Alignment:
Q  256 atcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattactccacatctcttgcatgttc 352  Q
    ||||||||||||||   ||| ||||| || ||| |||| ||||||  |||||||||||||||||||||| |||||||| ||| ||| |||| ||||||||    
T  23391074 atcttgaaagtcttgaacatgaatattttcatattcattatacccagagctatgtgtaggagacattagtgccatattcctcaacaactctggcatgttc 23391173  T
Q  353 atcactccttcttct 367  Q
    ||||| || ||||||    
T  23391174 atcaccccctcttct 23391188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 367
Target Start/End: Original strand, 23251621 - 23251757
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtcttc---attaatatattgatact---cataataccccaagctatgtgtaggagacattagcgccatatt 330  Q
    ||||||||||||| || ||||||||||||||||    || ||||| || |||||   ||| |||||| |||||||||||||| |||||||| ||||||||    
T  23251621 tccatagtgatacctcatcatcttgaaagtcttgtatatgaatatcttcatactgatcatgatacccaaagctatgtgtaggggacattagtgccatatt 23251720  T
Q  331 actccacatctcttgcatgttcatcactccttcttct 367  Q
     ||||||| |||| |||| |||| |||| | ||||||    
T  23251721 cctccacaactctggcatattcaacacttcctcttct 23251757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 353
Target Start/End: Original strand, 23247209 - 23247328
Alignment:
Q  237 tccatagtgatacttcctcatcttgaaagtctt---cattaatatattgatactcataataccccaagctatgtgtaggagacattagcgccatattact 333  Q
    ||||||||||||| || ||||||||||| ||||   ||| |||||  | |||||||| |||| | |||||||||||||| ||||| | ||||||||| ||    
T  23247209 tccatagtgatacctcatcatcttgaaaatcttgtacatgaatatcgtcatactcatgatactcaaagctatgtgtaggtgacatcaacgccatattcct 23247308  T
Q  334 ccacatctcttgcatgttca 353  Q
    ||||| |||| |||| ||||    
T  23247309 ccacaactctggcatattca 23247328  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 23283296 - 23283337
Alignment:
Q  302 ctatgtgtaggagacattagcgccatattactccacatctct 343  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||    
T  23283296 ctatgtgtaggggacattaacgccatattcctccacatctct 23283337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Original strand, 23289636 - 23289701
Alignment:
Q  302 ctatgtgtaggagacattagcgccatattactccacatctcttgcatgttcatcactccttcttct 367  Q
    ||||||||||| |||||||| ||||||||  |||||| ||||||||| |||| |||| | ||||||    
T  23289636 ctatgtgtaggggacattagtgccatatttttccacaactcttgcatattcaacacttcctcttct 23289701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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