View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_23 (Length: 298)
Name: NF7126_low_23
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 2 - 276
Target Start/End: Original strand, 27781967 - 27782241
Alignment:
| Q |
2 |
tagtcattttttctgcctgattggaaaaacctaagcgttctgctttaagatagagagtttttacagtatttccataatcaactgattcaagttcttcatt |
101 |
Q |
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| T |
27781967 |
tagtcatgttttctgcctgagtggaaaaacctaagcattctgctttaagatagagagtttttacagtatttccataatcaactgattcaagtttttcatt |
27782066 |
T |
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| Q |
102 |
tttatcatggactgagaccaacgccatgagatttttcaagatagaatctgggttctgaagagaagttgcatcagaagacatgataaatgttccaaaaggc |
201 |
Q |
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| T |
27782067 |
tttatcatggactgagaccaacgccatgagaatttccaagatagaatctgggttctgaagagaagttgcatcagaagacatgataaatgttccaaaaggc |
27782166 |
T |
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| Q |
202 |
atgtaattactagttcaatctgtaatgaagagccttggaagtgggtctttgtgtgacacacgggtatgaaacaag |
276 |
Q |
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| T |
27782167 |
atgtaattactagttcaatctgtaatgaagagccttggaagtgggtctttgtgtgacacacgagtatgaaacaag |
27782241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 42 - 259
Target Start/End: Original strand, 27785820 - 27786037
Alignment:
| Q |
42 |
tgctttaagatagagagtttttacagtatttccataatcaactgattcaagttcttcatttttatcatggactgagaccaacgccatgagatttttcaag |
141 |
Q |
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| T |
27785820 |
tgctttacgatagagattttttactatatttccataatcaacagattctagttcttgatttttatcatgaactgaggccaatgccacgaaaatttcaaag |
27785919 |
T |
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| Q |
142 |
atagaatctgggttctgaagagaagttgcatcagaagacatgataaatgttccaaaaggcatgtaattactagttcaatctgtaatgaagagccttggaa |
241 |
Q |
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| T |
27785920 |
atagaatctggattctcaaaagaagttgcatcagaacacagaatgaatgttccaaaaggcatgtaggtactggttcgatctgtaatgaagagccttggaa |
27786019 |
T |
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| Q |
242 |
gtgggtctttgtgtgaca |
259 |
Q |
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| T |
27786020 |
gtgggtctttgtgtgaca |
27786037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 255
Target Start/End: Original strand, 27765392 - 27765606
Alignment:
| Q |
42 |
tgctttaagatagagagttttta-cagtatttccataatcaactgattcaagttcttcatttttatcatggactgagaccaacgccatgagatttttcaa |
140 |
Q |
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||||||||||||| || |||||| | | ||||| |||||||| | ||| ||||| | |||||||||||||| || |||| ||||||||| ||| ||| |
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| T |
27765392 |
tgctttaagatagtgattttttaactatgtttccttaatcaacagcttcgagttcatagtttttatcatggacacaggccaatgccatgagaatttccaa |
27765491 |
T |
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| Q |
141 |
gatagaatctgggttctgaagagaagttgcatcagaagacatgataaatgttccaaaaggcatgtaattactagttcaatctgtaatgaagagccttgga |
240 |
Q |
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| T |
27765492 |
gagagaatctgggttctcaaacgatgttgcatcagaacatattatatatgttccaaaagacatttaattactggttcgatctgtaatgaagagccttgga |
27765591 |
T |
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| Q |
241 |
agtgggtctttgtgt |
255 |
Q |
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| T |
27765592 |
agtgggtctttgtgt |
27765606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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