View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_25 (Length: 270)
Name: NF7126_low_25
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_25 |
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| [»] scaffold0219 (1 HSPs) |
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Alignment Details
Target: scaffold0219 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0219
Description:
Target: scaffold0219; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 24 - 255
Target Start/End: Complemental strand, 11095 - 10864
Alignment:
| Q |
24 |
gcttgatatttcaaacaatgttcttggcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatg |
123 |
Q |
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| T |
11095 |
gcttgatatttcaaacaatgttcttggcagccaatattcttgggggaggtccatgattctgaacattggattgcctttgtgtgtaagggttgaaatcatg |
10996 |
T |
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| Q |
124 |
ttcccactttgagaggcacaagaaatctggatgaagagagatcatcaacctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatca |
223 |
Q |
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| T |
10995 |
ttcccactttgagaggcataagaaatctggatgaagagagatcatcaacctccattggccaaaatccttctaaactgtctgcaacttcgatgagagatca |
10896 |
T |
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| Q |
224 |
caagaggttaaagatttgtttcccttattcat |
255 |
Q |
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| T |
10895 |
caagaggttaaagatttgtttcccttattcat |
10864 |
T |
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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 15698022 - 15697967
Alignment:
| Q |
167 |
atcaacctccattggccaaaatccttctaaactgtctgcaacttcgacgagagatc |
222 |
Q |
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| T |
15698022 |
atcaacctccattgtccaaaatccttccaaattgtttgcagcttcgacgagagatc |
15697967 |
T |
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