View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_26 (Length: 265)
Name: NF7126_low_26
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 254
Target Start/End: Original strand, 37628833 - 37629054
Alignment:
| Q |
33 |
gtagctggtgaatcatggcatacctcatgacttaatggacactgtggagaggttaaccaaagaacactacaggaaatgcatggaacaaagattcaaggaa |
132 |
Q |
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| T |
37628833 |
gtagctggtgaatcatggcatacctcatgacttaatggacactgtggagaggttaaccaaagaacactacaggaaatgcatggaacaaagattcaaggaa |
37628932 |
T |
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| Q |
133 |
ttagtgtcttccaaagggctagaggctgttcaaactgaggtcaaagacatggactgggagagtactttccatttgcgtcacctacctgagtcaaacattt |
232 |
Q |
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| T |
37628933 |
ttagtgtcttccaaagggctagaggctgttcaaactgaggtcaaagacatggactgggagagtactttccatttgcgtcacctacctgagtcaaacattt |
37629032 |
T |
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| Q |
233 |
cagagatccctgatctcagtga |
254 |
Q |
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|||||||||||||||||||||| |
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| T |
37629033 |
cagagatccctgatctcagtga |
37629054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 34 - 254
Target Start/End: Complemental strand, 36872598 - 36872378
Alignment:
| Q |
34 |
tagctggtgaatcatggcatacctcatgacttaatggacactgtggagaggttaaccaaagaacactacaggaaatgcatggaacaaagattcaaggaat |
133 |
Q |
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| T |
36872598 |
tagctggtgaatcatggtataccccatgaccttatggacacattggagaggttgaccaaagagcactataggaaatgcatggagcataggtttaaggaag |
36872499 |
T |
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| Q |
134 |
tagtgtcttccaaagggctagaggctgttcaaactgaggtcaaagacatggactgggagagtactttccatttgcgtcacctacctgagtcaaacatttc |
233 |
Q |
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| T |
36872498 |
tcatatcaagcaaaggcttagatgttgtccaaactgaggtcaaagatatggattgggaaagcaccttccatgttcgtcacctccctgaatcaaacatttc |
36872399 |
T |
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| Q |
234 |
agagatccctgatctcagtga |
254 |
Q |
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|||||| |||||||||||||| |
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| T |
36872398 |
agagatacctgatctcagtga |
36872378 |
T |
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