View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_31 (Length: 248)
Name: NF7126_low_31
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_31 |
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| [»] scaffold0025 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 230
Target Start/End: Complemental strand, 29803592 - 29803369
Alignment:
| Q |
7 |
atggtgttacttgagatatttgctttgttagcaatattagttctcgtttttctcttgaaactaatattttcttggtggatttcaccgattcaaagaaatc |
106 |
Q |
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| T |
29803592 |
atggtgttacttgagatatttgctttgttagcaatattagttctcgtttttctcttgaaactaatattttcttggtggatttcaccgattcaaagaaatc |
29803493 |
T |
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| Q |
107 |
ataagcttcaaagatgtgggtttcaagggccaaccccaaattttccatttggaaatattcaagagatgaaaaagaagaacagtgttgattcttcatctgg |
206 |
Q |
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| T |
29803492 |
ataagcttcaaacatgtgggtttcaagggccaaccccaaattttccatttggaaatattcaagagatgaaaaagaagaacagtgttgattcttcatccgg |
29803393 |
T |
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| Q |
207 |
gtcctcaaagctcacccacgatat |
230 |
Q |
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| T |
29803392 |
gtcctcaaagctcacccacgatat |
29803369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 45413308 - 45413188
Alignment:
| Q |
58 |
ctcttgaaactaatattttcttggtggatttcaccgattcaaagaaatcataagcttcaaagatgtgggtttcaagggccaaccccaaattttccatttg |
157 |
Q |
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| T |
45413308 |
ctcttgatactaacattttcttggtggattttccctatccaaatacacaagaagcttaaaagaaatgggtttggaggaccaactccaagttttccatttg |
45413209 |
T |
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| Q |
158 |
gaaatattcaagagatgaaaa |
178 |
Q |
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| T |
45413208 |
gaaacattgaagagatgaaaa |
45413188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 67287 - 67226
Alignment:
| Q |
117 |
aagatgtgggtttcaagggccaaccccaaattttccatttggaaatattcaagagatgaaaa |
178 |
Q |
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| T |
67287 |
aagatgtggatttgatgggccaaccccaagttttccacttggaaacatcaaagagatgaaaa |
67226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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