View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7126_low_36 (Length: 209)
Name: NF7126_low_36
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 7172601 - 7172773
Alignment:
| Q |
18 |
atgaaagaaaaagcccattttgaactacaaacaagaacaagaacatatgtccacaccacacaatctcaaattctcatatctaatctcatctgcnnnnnnn |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7172601 |
atgaaagaaaaagcccattttgaactacaaacaagaacaagaacatatgtccacaccacacaatctcaaattctcatatctaatctcatctgcaaaaaaa |
7172700 |
T |
|
| Q |
118 |
tggcgcagtgcattaccaatacctttattcaaggaaaaccattccttccacttcccacaaaaaacgtagtaac |
190 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7172701 |
tggcgcagtgcattaccaatacctttgttcaaggaaaaccattccttccacttcccacaaaaaacgtagtaac |
7172773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University