View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_4 (Length: 643)
Name: NF7126_low_4
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 274 - 474
Target Start/End: Complemental strand, 4976749 - 4976549
Alignment:
| Q |
274 |
caacacacgattagtgtgtatgggtagagagggtaggaagaaccacccactgaggttggggacagaaactattttagaaagtgagagtgaggcctttttt |
373 |
Q |
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| T |
4976749 |
caacacacgattagtgtgtatgggtagagagggtaggaagaaccacccactgaggttggggacagaaactattttagaaagtgagagtgaggcctttttt |
4976650 |
T |
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| Q |
374 |
aatttcttttataactttattaaaaactttatggttgaatatttggacaatgtctccttaaaatagagggaattttgtgaatatgatttgaactttatgc |
473 |
Q |
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| T |
4976649 |
aatttcttttataactttattaaaaactttatggttgaatatttggacaatgtctccttaaaatagagggaattttgtgaatatgatttgaactttatgc |
4976550 |
T |
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| Q |
474 |
c |
474 |
Q |
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| T |
4976549 |
c |
4976549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 4977004 - 4976808
Alignment:
| Q |
19 |
catgtaacaccgaaccacgtgcagtgtgtggtgttagtgttccatgaagagagtgaaggaggggtagaatcggtaattgattgacggaaagagagaagtg |
118 |
Q |
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| T |
4977004 |
catgtaacaccgaaccacgtgcagtgtgtggtgttagtgttccatgaagagagtgaaggaggggtagaatcggtaattgattgacggaaagagagaagtg |
4976905 |
T |
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| Q |
119 |
cacggtattctgagattggtgcagatgcagagagaacatggtggtagtggaaatggaagagaaagaaaaggagaagaaggaaacgcatttttagggt |
215 |
Q |
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| T |
4976904 |
cacggtattctgagattggtgcagatgcagagagaacatggtggtagtggaaatggaagagaaagaaaaggagaagaaggaaacgcatttttagggt |
4976808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 536 - 632
Target Start/End: Complemental strand, 4976487 - 4976391
Alignment:
| Q |
536 |
gattgggatcaatcatttgactggacttgctgtcgttttgatttctaaaggttgggttcggtgtgaattattcgttcacccattaaccaacaccaaa |
632 |
Q |
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| T |
4976487 |
gattgggatcaatcatttgactggacttgctgtcgttttgatttctgaaggttgggtttggtgtgaattattcgttcacccatttaccaataccaaa |
4976391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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