View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_5 (Length: 619)
Name: NF7126_low_5
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 159 - 602
Target Start/End: Original strand, 7185226 - 7185665
Alignment:
| Q |
159 |
atgcaggctctgaggattccaggacctacaggtcataagtcactaagtttaacaggatctcagcctgaggctactgcatttggcatgaccacacctggcg |
258 |
Q |
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| T |
7185226 |
atgcaggctctgaggattccaggacctgcaggtcataagtcactaagtttaacaggatctcagcctgaggctactgcatttggcatgaccacacctggcg |
7185325 |
T |
|
| Q |
259 |
gaagttcaagtcaaggaaccagaacaaatgcgatgtttggacaaactgaaatcatgtctgttgtgaatgaattgaaagaaacaagaaaggaagtcaaggc |
358 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7185326 |
gaagtttaagtcaaggaaccagaacaaatgccatgtttggacaaactgaaatcatgtctgttgtgaatgaattgaaagaaacaagaaaggaagtcaaggc |
7185425 |
T |
|
| Q |
359 |
tattatcaagatcctgctgaggtttttcaaggtcatttccattgttatggctttgttcattttcgtaactctttttgttgttttaatcaagtaaaatcaa |
458 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7185426 |
tattatcaagatcctgctgaggtttttcaaggtcatttccattgttatggctttgttcattttcgtaactctttttgttgttttaatcaagtaaaatcaa |
7185525 |
T |
|
| Q |
459 |
tgttgatgttggtccttgttttaggattcatcatttcaggaagttgaactttaattcctattatggtccttgtattttgtctcctatatgtgtaattctg |
558 |
Q |
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| T |
7185526 |
tgttgatgttggtccttgttttaggattcatcatttcag--agttgaactttaatttctattatggtccttgtattttgtctcctatatgtgtaattctg |
7185623 |
T |
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| Q |
559 |
aactttaaacatgcttatgttttagtaaatcaataatactgcca |
602 |
Q |
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| T |
7185624 |
--ttttaaacatgcttatgttttagtaaatcaataatactgcca |
7185665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 228 - 588
Target Start/End: Original strand, 7156227 - 7156574
Alignment:
| Q |
228 |
gctactgcatttggcatgaccacacctggcggaagttcaagtcaaggaaccagaacaaatgcgatgtttggacaaactgaaatcatgtctgttgtgaatg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||| || |
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| T |
7156227 |
gctactgcatttggcatgaccacacctggcggaagttcaagtcaaggaaccagaacaaataccatgtctggacaaactgaaatcatgtctgttgtgcgtg |
7156326 |
T |
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| Q |
328 |
aattgaaagaaacaagaaaggaagtcaaggctattatcaagatcctgctgaggtttttcaaggtcatttccattgttatggctttgttcattttcgtaac |
427 |
Q |
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| T |
7156327 |
aattgaaagaaacaagaaaggaagtcaaggctattatcaagatcctgtcagggtttttcaaagtcatgtccattgttatggctttgttca-tttcttaac |
7156425 |
T |
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| Q |
428 |
tctttttgttgttttaatcaagtaaaatcaatgttgatgttggtccttgttttaggattcatcatttcaggaagttgaactttaattcctattatggtcc |
527 |
Q |
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| T |
7156426 |
tctttttgtgttaggattc-------atca--ttttatg---gtccttgtgttaggattcatcattttaggaagttgatctttaattacttttatggtcc |
7156513 |
T |
|
| Q |
528 |
ttgtattttgtctcctatatgtgtaattctgaactttaaacatgcttatgttttagtaaat |
588 |
Q |
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| T |
7156514 |
ttgtattttgtctcctatttgtgtaattctcaacattaaacatgcttatgctttagtaaat |
7156574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 7190252 - 7190351
Alignment:
| Q |
178 |
caggacctacaggtcataagtcactaagtttaacaggatctcagcctgaggctactgcatttggcatgaccacacctggcggaagttcaagtcaaggaac |
277 |
Q |
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| T |
7190252 |
caggacctacaggtcaaaagtcaataagtttaacaggatcgcagccagatgctactgcatctggtgcgaccacacctggcggaagttcaagtcaaggaac |
7190351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 7185081 - 7185117
Alignment:
| Q |
20 |
gatgcagcagcagaaatccatggggcaacctctgctt |
56 |
Q |
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| T |
7185081 |
gatgcagcagcagaaatccatggggcaacctctgctt |
7185117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 7184913 - 7184949
Alignment:
| Q |
20 |
gatgcagcagcagaaatccatggggcaacctctgctt |
56 |
Q |
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| T |
7184913 |
gatgcagcagccgaaatccatggggcaacctctgctt |
7184949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 56
Target Start/End: Original strand, 7190098 - 7190133
Alignment:
| Q |
21 |
atgcagcagcagaaatccatggggcaacctctgctt |
56 |
Q |
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| T |
7190098 |
atgcagcagcagaaatccatggggcaacctcagctt |
7190133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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