View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7126_low_8 (Length: 597)
Name: NF7126_low_8
Description: NF7126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7126_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 17 - 588
Target Start/End: Original strand, 45746194 - 45746765
Alignment:
| Q |
17 |
caccaccaaaaccgttccttccaataccaagttccagaccagaatttgaggttggtagagccatgggattagccaatgatgatattggtttgccaaggaa |
116 |
Q |
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| T |
45746194 |
caccaccaaaaccattccttccaataccaagttccagaccagaatttgaggttggtagagccatgggattagccaatgatgatattggtttgccaaggaa |
45746293 |
T |
|
| Q |
117 |
cttgtttgttaaggcacatatacggttcaattcgtcctttagacgagcgttttcaattctaatctggtgctcttcaaacaatatttggccaggaattgct |
216 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746294 |
cttgtttgttaaggcgcatatacggttcaattcatcctttagacgagcgttttcaattctaatctggtgctcttcaaacaatatttggccaggaattgct |
45746393 |
T |
|
| Q |
217 |
ggtccaccacagttgttacatattggattcaccattgcttctttcatcatgctattctcccctcttagcttgtcattttcctgcctaagcattatgttct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746394 |
ggtccaccacagttgttacatattggattcaccattgcttctttcatcatgctattctcccctcttagcttgtcattttcctgcctaagcattatgttct |
45746493 |
T |
|
| Q |
317 |
catgcctttccagttgagtctgattcaacaaaaacaaagtcagttaattgttacaaattacagtatctatattaatacaaatgcaataactgttgtgttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746494 |
catgcctttccagttgagtctgattcaacaaaaacaaagtcagttaattgttacaaattacagtatctatattaatacaaatgcaataactgttgtgttt |
45746593 |
T |
|
| Q |
417 |
aacaagtttttaaatcaaatttgtaatctttgatattatggagaatcacaaacaaaagcagcttaggcaaccttgttgtggagacattaaaaaccttaat |
516 |
Q |
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| T |
45746594 |
aacaagtttttaaatcacatttgtaatctttgatattatggagaatcacaaacaaaagcggcttaggcaaccttgttgtggagacattaaaaaccttaat |
45746693 |
T |
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| Q |
517 |
gccacaactcagatcgcgagtgcagatttttaaaagaaaatggaacatgatatttaacattcaccttcattt |
588 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45746694 |
gccgcaactcagatcgcgactgcagatttttaaaagaaaatggaacatgatatttaacattcaccttcattt |
45746765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 269 - 337
Target Start/End: Original strand, 12326862 - 12326930
Alignment:
| Q |
269 |
tattctcccctcttagcttgtcattttcctgcctaagcattatgttctcatgcctttccagttgagtct |
337 |
Q |
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||||||| |||| ||||| ||||| || |||||||||| |||||||||||||||||| |||||||| |
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| T |
12326862 |
tattctcagctctaagcttatcattctcttgcctaagcaaattgttctcatgcctttccaattgagtct |
12326930 |
T |
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