View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7127_low_1 (Length: 607)

Name: NF7127_low_1
Description: NF7127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7127_low_1
NF7127_low_1
[»] chr5 (5 HSPs)
chr5 (300-596)||(4975502-4975800)
chr5 (95-220)||(4975882-4976007)
chr5 (1-72)||(4976326-4976398)
chr5 (265-301)||(4975840-4975876)
chr5 (261-297)||(38976296-38976332)
[»] chr2 (2 HSPs)
chr2 (306-366)||(15614095-15614156)
chr2 (318-365)||(4565035-4565083)
[»] chr4 (5 HSPs)
chr4 (304-366)||(32767686-32767749)
chr4 (318-366)||(3415181-3415230)
chr4 (315-346)||(52464070-52464101)
chr4 (261-297)||(19240790-19240826)
chr4 (261-297)||(43286312-43286348)
[»] chr3 (4 HSPs)
chr3 (318-366)||(27969576-27969625)
chr3 (300-366)||(42854230-42854299)
chr3 (318-366)||(33983095-33983144)
chr3 (261-297)||(24310821-24310857)
[»] chr6 (5 HSPs)
chr6 (318-365)||(20139318-20139366)
chr6 (318-365)||(22193503-22193551)
chr6 (261-297)||(20139234-20139270)
chr6 (261-297)||(22193599-22193635)
chr6 (261-297)||(31472539-31472575)
[»] chr7 (3 HSPs)
chr7 (318-366)||(2621393-2621442)
chr7 (261-297)||(2621490-2621526)
chr7 (318-346)||(47381454-47381482)
[»] chr8 (3 HSPs)
chr8 (261-297)||(9201129-9201165)
chr8 (318-346)||(42739336-42739364)
chr8 (261-297)||(42739412-42739448)
[»] chr1 (1 HSPs)
chr1 (318-346)||(46237570-46237598)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 300 - 596
Target Start/End: Complemental strand, 4975800 - 4975502
Alignment:
Q  300 gagtccgttagggttagtccgttcgggccacgggcagcccgcaaaaa-ttaagagtgggtcatttttgatctg-atctagactgaacaacccaattaagg 397  Q
    ||||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||  | || | || ||||| |||||| ||||||||    
T  4975800 gagtccgttagggctagcccattcgggccacgggcagcccgcaaaaaattaagagtgggtcattttttgtgtggacctggactggacaacc-aattaagg 4975702  T
Q  398 atc-ggtccaaattgatttttaatcctaaagaattagaaaccctagcacgacaatctcactcacactcttttctctctatcgtcgtatcatcttcttcac 496  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4975701 atccggcccaaattgatttttaatcctaaagaattagaaaccctagcacgacaatgtcactcacactcttttctctctatcgtcgtatcatcttcttcac 4975602  T
Q  497 aagctcacctcacgcacgcacgccgaagccaacccaagcatcatttcttcgatttctccatccggccaagctgaaatcacacaatcactcacacaggttc 596  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4975601 aagcacacctcacgcacgcacgccgaagccaacccaagcatcatttcttcgatttctccatccggccaagctgaaatcacacagtcactcacacaggttc 4975502  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 4976007 - 4975882
Alignment:
Q  95 caaaaagaaaatgtcaattaaatgaagtgtcttgttcatgagtgttggggtcactcggaacttattagatgcatatataaaataataattgtacatgaat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||     
T  4976007 caaaaagaaaatgtcaattaaatgaagtgtcttgttcatgagtgttggggtgactcggaacttattagatgcatgtataaattaataattgtacatgaac 4975908  T
Q  195 ataatactacttaaatttatgatgca 220  Q
    ||||||||||||||||||||||||||    
T  4975907 ataatactacttaaatttatgatgca 4975882  T

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Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 4976398 - 4976326
Alignment:
Q  1 ataccaaaatgacaatgaaattttccttaataaaaagaaagatgattatgttaaa-ttttagtttatttagta 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4976398 ataccaaaatgacaatgaaattttccttaataaaaagaaagatgattatgttaaatttttagtttatttagta 4976326  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 4975876 - 4975840
Alignment:
Q  265 taaaacgtagggtttaggcctaataattgcagctcga 301  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  4975876 taaaacgtagggtttgggcctaataattgtagctcga 4975840  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 38976332 - 38976296
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    |||||||||||||||| || |||||||||||||||||    
T  38976332 cgaataaaacgtagggcttgggcctaataattgcagc 38976296  T

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Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 306 - 366
Target Start/End: Complemental strand, 15614156 - 15614095
Alignment:
Q  306 gttagggttagtccgttcgggccacgggcagcccgca-aaaattaagagtgggtcatttttg 366  Q
    ||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15614156 gttagggctagcccgttcgggccacgggcagcccgcaaaaaattaagagtgggtcatttttg 15614095  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 4565035 - 4565083
Alignment:
Q  318 ccgttcgggccacgggcagcccgc-aaaaattaagagtgggtcattttt 365  Q
    ||||| |||||||||||||||||| ||||||||| ||||||| ||||||    
T  4565035 ccgtttgggccacgggcagcccgcaaaaaattaaaagtgggttattttt 4565083  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 32767686 - 32767749
Alignment:
Q  304 ccgttagggttagtccgttcgggccacgggcagcccgc-aaaaattaagagtgggtcatttttg 366  Q
    |||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32767686 ccgttaaggctagcccgttcgggccacgggcagcccgcaaaaaattaagagtgggtcatttttg 32767749  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 3415230 - 3415181
Alignment:
Q  318 ccgttcgggccacgggcagcccgca-aaaattaagagtgggtcatttttg 366  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3415230 ccgttcgggccacgggcagcccgcaaaaaattaagagtgggtcatttttg 3415181  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 346
Target Start/End: Complemental strand, 52464101 - 52464070
Alignment:
Q  315 agtccgttcgggccacgggcagcccgcaaaaa 346  Q
    ||||||||||||||||||||||||||||||||    
T  52464101 agtccgttcgggccacgggcagcccgcaaaaa 52464070  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 19240790 - 19240826
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  19240790 cgaataaaatgtagggtttgggcctaataattgcagc 19240826  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 43286348 - 43286312
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    |||||||||||||||| || |||||||||||||||||    
T  43286348 cgaataaaacgtagggcttgggcctaataattgcagc 43286312  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 27969576 - 27969625
Alignment:
Q  318 ccgttcgggccacgggcagcccgc-aaaaattaagagtgggtcatttttg 366  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27969576 ccgttcgggccacgggcagcccgcaaaaaattaagagtgggtcatttttg 27969625  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 42854299 - 42854230
Alignment:
Q  300 gagtccgttagggttagtccgttcgggccacggg--cagcccgcaaaaa-ttaagagtgggtcatttttg 366  Q
    ||||||||||||  ||| ||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  42854299 gagtccgttaggactagcccgttcgggccacgggggcagcccgcaaaaaattaagagtgggtcatttttg 42854230  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 33983095 - 33983144
Alignment:
Q  318 ccgttcgggccacgggcagcccgcaaaa-attaagagtgggtcatttttg 366  Q
    ||||| |||||||||||||| ||||||| |||||||||||||||||||||    
T  33983095 ccgtttgggccacgggcagctcgcaaaaaattaagagtgggtcatttttg 33983144  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 24310821 - 24310857
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  24310821 cgaataaaacgtagggtttagacctaaaaattgcagc 24310857  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 365
Target Start/End: Original strand, 20139318 - 20139366
Alignment:
Q  318 ccgttcgggccacgggcagcccgc-aaaaattaagagtgggtcattttt 365  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20139318 ccgttcgggccacgggcagcccgcaaaaaattaagagtgggtcattttt 20139366  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 22193551 - 22193503
Alignment:
Q  318 ccgttcgggccacgggcagcccgca-aaaattaagagtgggtcattttt 365  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22193551 ccgttcgggccacgggcagcccgcaaaaaattaagagtgggtcattttt 22193503  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 20139234 - 20139270
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    |||||||||||||||| || |||||||||||||||||    
T  20139234 cgaataaaacgtagggcttgggcctaataattgcagc 20139270  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 22193635 - 22193599
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    |||||||||||||||| || |||||||||||||||||    
T  22193635 cgaataaaacgtagggcttgggcctaataattgcagc 22193599  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 31472575 - 31472539
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    |||||||||||||||| || |||||||||||||||||    
T  31472575 cgaataaaacgtagggcttgggcctaataattgcagc 31472539  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 2621442 - 2621393
Alignment:
Q  318 ccgttcgggccacgggcagcccgc-aaaaattaagagtgggtcatttttg 366  Q
    ||||| ||||||||| |||||||| ||||||||||| |||||||||||||    
T  2621442 ccgtttgggccacggacagcccgcgaaaaattaagattgggtcatttttg 2621393  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 2621526 - 2621490
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    |||||||||||||||||||  ||||||||||||||||    
T  2621526 cgaataaaacgtagggtttgagcctaataattgcagc 2621490  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 47381482 - 47381454
Alignment:
Q  318 ccgttcgggccacgggcagcccgcaaaaa 346  Q
    |||||||||||||||||||||||||||||    
T  47381482 ccgttcgggccacgggcagcccgcaaaaa 47381454  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 9201129 - 9201165
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  9201129 cgaataaaacgtagggtttgggccgaataattgcagc 9201165  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 42739364 - 42739336
Alignment:
Q  318 ccgttcgggccacgggcagcccgcaaaaa 346  Q
    |||||||||||||||||||||||||||||    
T  42739364 ccgttcgggccacgggcagcccgcaaaaa 42739336  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 42739448 - 42739412
Alignment:
Q  261 cgaataaaacgtagggtttaggcctaataattgcagc 297  Q
    |||||||||||||||| || |||||||||||||||||    
T  42739448 cgaataaaacgtagggcttgggcctaataattgcagc 42739412  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 318 - 346
Target Start/End: Complemental strand, 46237598 - 46237570
Alignment:
Q  318 ccgttcgggccacgggcagcccgcaaaaa 346  Q
    |||||||||||||||||||||||||||||    
T  46237598 ccgttcgggccacgggcagcccgcaaaaa 46237570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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