View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7127_low_3 (Length: 410)
Name: NF7127_low_3
Description: NF7127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7127_low_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 15 - 410
Target Start/End: Complemental strand, 4441480 - 4441087
Alignment:
| Q |
15 |
ggacatcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaat |
114 |
Q |
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| T |
4441480 |
ggacatcaattagcagcatcttcagcgatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaat |
4441381 |
T |
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| Q |
115 |
aatgttatatcacatttcataactatttagcactgatacttaagattgaagtcatatacactttggtgtcggacaacaacacagacactaacatatttgg |
214 |
Q |
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| T |
4441380 |
aatgttatatcacatttcataactatttaggactgatacttaagattgaagtcatatacactttggtgtcggacaacaacac-gacactaacatatt-gg |
4441283 |
T |
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| Q |
215 |
ttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagattaattgctccttaaaaata |
314 |
Q |
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| T |
4441282 |
ttacattcaattgcttacatatttgcaaagtattatcaaggttgacagggcgtgtgtaagtgtttcatagatttaggagattaattgctccttaaaaata |
4441183 |
T |
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| Q |
315 |
ttcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccacatatctacaactac |
410 |
Q |
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| T |
4441182 |
ttcagatatttgcgatggatatcaatgaagaagtatccactgaagtcctaacctttgctacgacagaacctctgctctccacatatctacaactac |
4441087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 8383243 - 8383383
Alignment:
| Q |
20 |
tcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaataatgt |
119 |
Q |
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| T |
8383243 |
tcaattagcagtatcttcagtgatggtaaacttattgtcgtaaagctttgtatgtttagatgaattgcattgcaaagactgtggaacaaacgaattattt |
8383342 |
T |
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| Q |
120 |
tatatcacatttcataactatttagcactgatacttaagatt |
161 |
Q |
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| T |
8383343 |
tatatcaca-ttcataactatttagcactgatacataagatt |
8383383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 137
Target Start/End: Original strand, 8367244 - 8367361
Alignment:
| Q |
20 |
tcaattagcagcatcttcagcaatggtaaacttattggtgtagtgctttgcacgtctagatgaattccaccacaaatactgaggaacaaacaaataatgt |
119 |
Q |
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| T |
8367244 |
tcaattagcagtatcttcagtgatggtaaacttattgtcgtagagctttgaatgtttagatgaatttcactacgaatactgtgtaacaaacaaattatat |
8367343 |
T |
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| Q |
120 |
tatatcacatttcataac |
137 |
Q |
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| T |
8367344 |
tatatgaaatttcataac |
8367361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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