View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7128_low_5 (Length: 239)
Name: NF7128_low_5
Description: NF7128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7128_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24522931 - 24522673
Alignment:
| Q |
1 |
tcctacaaaaattaatttaagaacaagatttgagtgatggcacttgagaagctctaaatcatgactttgatcagaatcacatacctttctcaaaaccctg |
100 |
Q |
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| T |
24522931 |
tcctacaaaaattaatttaagaacaagatttgagtgatggcacttgagaagctctaaatcatgactttgatcagaatcacatacctttctcaaaaccctg |
24522832 |
T |
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| Q |
101 |
cccttaatatagacta----------------aaataaattacac----agttcaagtacatcaacaagattgatgcctttacatagttccatgggtgaa |
180 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24522831 |
cccttaatatagactaaaaaaacaagcaccccaaataaattacaccactagttcaagtacatcaacaagattgatgcctttacatagttccatgagtgaa |
24522732 |
T |
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| Q |
181 |
ttggaactacatgtttatttgaaccttctcataaaaagttgagagataagtacatattc |
239 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24522731 |
ttggaactacatatttatttgaaccttctcataaaaagttgagagataactacatattc |
24522673 |
T |
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