View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7129_low_1 (Length: 391)
Name: NF7129_low_1
Description: NF7129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7129_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 39809147 - 39808783
Alignment:
| Q |
20 |
caacggtggtagaagcgccaccaccggtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaacctttctttgtatta |
119 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39809147 |
caacggtggtagaagcaccaccaccggtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaacctttctttgtatta |
39809048 |
T |
|
| Q |
120 |
tatatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgttacatgatcaacatg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39809047 |
tatatgtaatgtaaaactactatacagtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgttacatgatcaacatg |
39808948 |
T |
|
| Q |
220 |
gcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcatttttggttcaaatttgtgtgttgtgtatt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39808947 |
gcttatctttatgtaatgttttgtgtgcagtgttagagaaccacatgcaatgaacgatgtatattgctcatttttggttcaaatttgtgtgttgtgtatt |
39808848 |
T |
|
| Q |
320 |
gtattgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctca |
384 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39808847 |
gtgttgtcttttgtgttagttagttaggcaccgaatataattaacattattccttattcttctca |
39808783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University