View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7129_low_2 (Length: 296)
Name: NF7129_low_2
Description: NF7129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7129_low_2 |
 | |
|
| [»] scaffold0481 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0308 (1 HSPs) |
| | |
|
| [»] scaffold0765 (1 HSPs) |
| | |
|
| [»] scaffold0227 (1 HSPs) |
| | |
|
| [»] scaffold0179 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 114; Significance: 8e-58; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 34231291 - 34231170
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34231291 |
catcacataatggtttgttttggttgtttgtatgactctaaatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
34231192 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
34231191 |
tataattccatttttgattgtt |
34231170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 29114097 - 29114218
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
29114097 |
catcacgtaatgatttgttatggttgtttgtatgactctaaatttttagagtagctcttttggcacaccttgtgctagaatagttgcttttggtgattaa |
29114196 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
29114197 |
tataattccatttttgattgtt |
29114218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 24753010 - 24752890
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||||||| | ||||| ||||||||||| |||| |
|
|
| T |
24753010 |
catcgcgtaatggtttgttttgattgtttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtgctacaagagctgcttttggtggttaa |
24752911 |
T |
|
| Q |
118 |
tataattccatttttgattgt |
138 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
24752910 |
tataattctatttttgattgt |
24752890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 139
Target Start/End: Original strand, 20037562 - 20037670
Alignment:
| Q |
32 |
ttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccattt |
130 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||| ||| ||| ||||||||||||||| |||||||| ||||||||| |
|
|
| T |
20037562 |
ttgttttggttgtttgtatgactctatgtttgtaaagtagttcttttggcacaccttatgctagaggagttgcttttggtggttaatatatattccattt |
20037661 |
T |
|
| Q |
131 |
ttgattgtt |
139 |
Q |
| |
|
||||||||| |
|
|
| T |
20037662 |
ttgattgtt |
20037670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 20047686 - 20047801
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-at |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||| | ||| ||||||||||||||| |||||||| || |
|
|
| T |
20047686 |
taatggtttgttttggttgtttgtatgactctatgtttgtaaaatagttcttttggcacaccttgtactagaggagttgcttttggtggttaatatatat |
20047785 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
20047786 |
tccattttttattgtt |
20047801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 18654387 - 18654503
Alignment:
| Q |
25 |
taatggtttg-ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | |||||| ||||| |||||||||||||||||||| ||| ||||||||||||||| ||||| || | |
|
|
| T |
18654387 |
taatggtttggttttggttgtttgtatgactctgtgtttgtaaagtagttcttttggcacaccttgtgctagaggagttgcttttggtggttaatttata |
18654486 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
18654487 |
ttccattttttattgtt |
18654503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 7459226 - 7459340
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-at |
123 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | ||||| |||| |||||||||||||||||||| || ||||||||||||||| |||||||| || |
|
|
| T |
7459226 |
taatggtttgttttggttgtttgtatggctctgttcttgta-agtaattcttttggcacaccttgtgctaggggagttgcttttggtgtttaatatatat |
7459324 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
7459325 |
tccatttttgtttgtt |
7459340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 4076867 - 4076744
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagag-ttgcttttggtgatta |
116 |
Q |
| |
|
|||||| |||||||||||||||| || |||| ||||||| | ||| || |||| |||||||||||||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
4076867 |
catcacttaatggtttgttttggatgcttgtctgactctttgtttttaaagtaattcttttggcacaccttgtgctagaggagtttgcttttggtgatta |
4076768 |
T |
|
| Q |
117 |
atata-attccatttttgattgtt |
139 |
Q |
| |
|
|||| ||||||||||| |||||| |
|
|
| T |
4076767 |
ttatatattccattttttattgtt |
4076744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 139
Target Start/End: Original strand, 23397267 - 23397331
Alignment:
| Q |
75 |
ttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||| ||||||||||||| ||| ||||| ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
23397267 |
ttttagcacaccttgtgctagaggagtttcttttggtg-ttaatatatattccatttttgattgtt |
23397331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 121
Target Start/End: Complemental strand, 28060142 - 28060066
Alignment:
| Q |
45 |
ttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata |
121 |
Q |
| |
|
||||||||||| | ||| || |||| ||| |||| |||||||| ||| ||| ||||||||||||||| |||||||| |
|
|
| T |
28060142 |
ttgtatgactcattgtttttaaagtaactcatttgacacaccttatgctagaggagttgcttttggtgtttaatata |
28060066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 46177840 - 46177725
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
||||| ||||| ||||||||||| | |||||| | |||||| |||| |||||| ||||||||| | | ||| |||||| |||||||| | |||||| | |
|
|
| T |
46177840 |
taatgatttgtagtggttgtttgttttgactctgtttttgtaaagtaattcttttagcacaccttatactagaggagttgtttttggtgct-aatatata |
46177742 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
46177741 |
ttccatttttgattgtt |
46177725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 33121865 - 33121986
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33121865 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttgacacaccttatgccagaagagttgcttttggtgattaa |
33121964 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33121965 |
tataattccatttttgattgtt |
33121986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 11639558 - 11639437
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
11639558 |
catcgcgtaatggtttgttttggttggttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtgcaagaagagttgattttggtggttaa |
11639459 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11639458 |
tataattccatttttgattgtt |
11639437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 36635030 - 36634916
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| | | | |||||||||||||||||||||| |
|
|
| T |
36635030 |
catcacgtaatggtttgttttggttgtttgtatgactctatgtttgtagagtagttcttctggcacaccttatactaaaagagttgcttttggtgattaa |
36634931 |
T |
|
| Q |
118 |
tataattccattttt |
132 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
36634930 |
tataattccattttt |
36634916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 8695439 - 8695560
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||| |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
8695439 |
catcgcgtaatggtttgttttggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaa |
8695538 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||| ||||||| ||||| |
|
|
| T |
8695539 |
tataattatatttttgtttgtt |
8695560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 9047326 - 9047447
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||| |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
9047326 |
catcgcgtaatggtttgttttggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaa |
9047425 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||| ||||||| ||||| |
|
|
| T |
9047426 |
tataattatatttttgtttgtt |
9047447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 25341878 - 25342004
Alignment:
| Q |
14 |
tggacatcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtga |
113 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||| ||| ||| ||||||||||||| |
|
|
| T |
25341878 |
tggacatcgcttaatgatttgttttggttatttgtatgactctatgtttgtaaagtagttcttttggcacaccttatgctagagtggttgcttttggtgg |
25341977 |
T |
|
| Q |
114 |
ttaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||| ||| |||||||||||||| |
|
|
| T |
25341978 |
ttaatatatatttcatttttgattgtt |
25342004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 60 - 139
Target Start/End: Complemental strand, 1764682 - 1764603
Alignment:
| Q |
60 |
tttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccatttttgattgtt |
139 |
Q |
| |
|
||||| |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1764682 |
tttgttgagtagttcttttggcacaccttatgttagaagagttgcttttggtgattaatataatttcatttttgattgtt |
1764603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 26845467 - 26845341
Alignment:
| Q |
14 |
tggacatcacgtaatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtg |
112 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||||| | |||||| | |||||| |||| |||||| ||||||||||||| ||| ||||||||||||||| |
|
|
| T |
26845467 |
tggacatcgcttaatggtttgtattggttgtttgttttgactctgtttttgtaaagtaattcttttagcacaccttgtgctagaggagttgcttttggtg |
26845368 |
T |
|
| Q |
113 |
attaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||| |||||||||||||||||| |
|
|
| T |
26845367 |
-ttaatatatattccatttttgattgtt |
26845341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 47536845 - 47536740
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatat-aattccatttttg |
133 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||| ||||||| | | ||| || |||||||| ||||||| |||||||||||| |
|
|
| T |
47536845 |
ttttgtttgtttgtatgactctgtgtttgtagagtagctcttttggcacatcttgtgctacaggagctgtttttggtggttaatataaattccatttttt |
47536746 |
T |
|
| Q |
134 |
attgtt |
139 |
Q |
| |
|
|||||| |
|
|
| T |
47536745 |
attgtt |
47536740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 32233670 - 32233749
Alignment:
| Q |
61 |
ttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatat-aattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| ||||||||||||||| ||||||| |||| ||||||| |||||| |
|
|
| T |
32233670 |
ttgtagagtagttcttttggcacaccttgtgctagaggagttgcttttggtggttaatataaatttcattttttattgtt |
32233749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 19221712 - 19221599
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatattt-gtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||| ||| ||||| |||||||||||||||||| ||| |||||||||||||| |||||||| | |
|
|
| T |
19221712 |
taatggtttgttatggttgtttgtatgactcggtgttttgtaaagtag---ttttggcacaccttgtgctagaggagttgcttttggttgttaatatata |
19221616 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
19221615 |
ttccattttttattgtt |
19221599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 32093477 - 32093582
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttg |
133 |
Q |
| |
|
||||| ||| || ||||||||| | |||||||||||||||||||||||| |||||| | | | ||| ||||||||||| |||||||| || ||||||||| |
|
|
| T |
32093477 |
ttttgtttgcttttatgactctgtgtttgtagagtagctcttttggcacgccttgtactataggagctgcttttggtggttaatatatatcccatttttg |
32093576 |
T |
|
| Q |
134 |
attgtt |
139 |
Q |
| |
|
|||||| |
|
|
| T |
32093577 |
attgtt |
32093582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 49500936 - 49501003
Alignment:
| Q |
73 |
tcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||||||| ||| |||||||| |||||||||||| ||||| |
|
|
| T |
49500936 |
tcttttggcacatcttgtgctagaggagttgctttttgtggttaatatatattccatttttgcttgtt |
49501003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 43122281 - 43122348
Alignment:
| Q |
73 |
tcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||| ||| ||| ||| ||||||||||| ||| |||||||| |||||||||||| ||||| |
|
|
| T |
43122281 |
tcttttggcacatcttatgctagaggagttgctttttgtggttaatatatattccatttttgcttgtt |
43122348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 50543747 - 50543693
Alignment:
| Q |
83 |
caccttgtgccagaagagttgcttttggtgattaatata-attccatttttgatt |
136 |
Q |
| |
|
|||||| ||| ||| |||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
50543747 |
caccttatgctagaggagttgcttttgatgattaatatatattccatttttgatt |
50543693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 24124389 - 24124513
Alignment:
| Q |
18 |
catcacgtaatggtttg-ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagag-ttgcttttggtgatt |
115 |
Q |
| |
|
|||||| |||||||||| |||||| || |||| ||||| | | ||| || |||| || |||| ||||| |||||| ||| ||| |||||||||||| || |
|
|
| T |
24124389 |
catcacttaatggtttgtttttggatgcttgtttgactgtttgtttttaaagtaattcctttgacacactttgtgctagaggagtttgcttttggtggtt |
24124488 |
T |
|
| Q |
116 |
aatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||| ||||||||||| |||||| |
|
|
| T |
24124489 |
aatatatattccattttttattgtt |
24124513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 139
Target Start/End: Original strand, 54559076 - 54559104
Alignment:
| Q |
111 |
tgattaatataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
54559076 |
tgattaatataattccatttttgattgtt |
54559104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 8446718 - 8446839
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8446718 |
catcacgtaatggtttgttttggttgtttgtatgactctaaatttgtagagtagctctttcggcacaccttgtgccagaagagttgcttttgatgattaa |
8446817 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
8446818 |
tataattccatttttgattgtt |
8446839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 10583963 - 10584084
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10583963 |
catcacgtaatgatttgttttagttgtttgtatgactttaaatttgtagagtagctcttttggcacaccttgtgctagaagagttgcttttggtgattaa |
10584062 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
10584063 |
tataatttcatttttgattgtt |
10584084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 31082172 - 31082277
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatat-aattccatttttg |
133 |
Q |
| |
|
||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| | | ||||| |||||||| ||||||| |||||||||||| |
|
|
| T |
31082172 |
ttttgtttgtttgtatgactctgtgtttgtagagtagctcttttggcacaccttgtgctacataagttgtttttggtggttaatataaattccatttttt |
31082271 |
T |
|
| Q |
134 |
attgtt |
139 |
Q |
| |
|
|||||| |
|
|
| T |
31082272 |
attgtt |
31082277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 45256382 - 45256476
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||| ||| |||||| |||||||| |||||||| |
|
|
| T |
45256382 |
taatggtttgttttggttgtttgtatgactctgt--ttgtgaagtagttcttttggcacaccttgtgctagaggagttgtttttggtggttaatata |
45256476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 29470742 - 29470866
Alignment:
| Q |
14 |
tggacatcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtga |
113 |
Q |
| |
|
|||||||| ||| ||||||| |||| | |||||||||||||| | ||||||||||||||||||||||||||||| ||| | | ||| ||||||||||| |
|
|
| T |
29470742 |
tggacatcgcgtgatggttt--tttgttcgtttgtatgactctgtgtttgtagagtagctcttttggcacaccttatgctacaggagctgcttttggtgg |
29470839 |
T |
|
| Q |
114 |
ttaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||| ||| ||||||| |||||| |
|
|
| T |
29470840 |
ttaatatatatttcattttttattgtt |
29470866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 17658397 - 17658303
Alignment:
| Q |
46 |
tgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
||||||||| | | |||||| |||||||||||||||||||||||||| | | ||| ||||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
17658397 |
tgtatgactttgtgtttgtaaagtagctcttttggcacaccttgtgctacaggagctgcttttggtggttaatatatattccatttttggttgtt |
17658303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 23679740 - 23679687
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacacctt |
88 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
23679740 |
ttttgtttgtttgtatgactctgtatttgtagagtagctattttggcacacctt |
23679687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 136
Target Start/End: Complemental strand, 26031077 - 26030965
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| | || ||| || | |||||| ||||||||||||| ||| ||||||||||||||| |||||||| | |
|
|
| T |
26031077 |
taatggtttgtattggttgtttgttttgactctgttttggtaaagcaattcttttagcacaccttgtgctagaggagttgcttttggtg-ttaatatata |
26030979 |
T |
|
| Q |
123 |
ttccatttttgatt |
136 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26030978 |
ttccatttttgatt |
26030965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 10267640 - 10267576
Alignment:
| Q |
76 |
tttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||||||| |||| ||||||||||| |||||| |
|
|
| T |
10267640 |
tttggcacaccttgtgctagaggagttatttttggtgattattatatattccattttttattgtt |
10267576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 18)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 18107104 - 18107225
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18107104 |
catcacgtaatggtttgttttggttgtttgtatgactctaaatttgtagagtagttcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
18107203 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
18107204 |
tataattccattttttattgtt |
18107225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 19164572 - 19164457
Alignment:
| Q |
24 |
gtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataat |
123 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
19164572 |
gtaatggtttgctttggttgtttgtatgactctatgtttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataat |
19164473 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19164472 |
tccatttttgattgtt |
19164457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 30274360 - 30274482
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatattt-gtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgatta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
30274360 |
catcacgtaatggtttgttttggttgtttgtatgactctaagttttgtagagtagctcttttggcacatcttatgctagaagagttgcttttggtgatta |
30274459 |
T |
|
| Q |
117 |
atataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30274460 |
atataattccatttttgattgtt |
30274482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 34322867 - 34322988
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |
|
|
| T |
34322867 |
catcacgtaatggtttgttttggttgtttatatgactctaagtttgtagagtagctcttttggcacaccttgtgctagaagagttgtttttggtgattta |
34322966 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
34322967 |
tataattccattttttattgtt |
34322988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 42823036 - 42822915
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| | |
|
|
| T |
42823036 |
catcacgtaatggtttgttttgatggtttgtatgactctaagtttgtagagtagctcttttggcacactttgtgctagaagagttgcttttggtgattta |
42822937 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
42822936 |
tataattccatttttgattgtt |
42822915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 449643 - 449522
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||| |||||||||||||| |||||||| |
|
|
| T |
449643 |
catcacgtaatggtttgttttggttgtttgtatgactctaagtttgtagagtagctcttttggcacatcttatgctggaagagttgcttttcgtgattaa |
449544 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
449543 |
tataattccattttttattgtt |
449522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 42777830 - 42777710
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42777830 |
catcacgtaatggtttgttt-ggtggtttgtatgactctttatttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattat |
42777732 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
42777731 |
tataattccatttttgtttgtt |
42777710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 52741386 - 52741506
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52741386 |
catcacttaatggtttgttt-ggttgtttgtatgactctttatttatagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaa |
52741484 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
52741485 |
tataatttcatttttgattgtt |
52741506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 53487501 - 53487622
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||| | |
|
|
| T |
53487501 |
catcacgtaatggtttgttttggttgtttgtatgactctatgtttgtagagtaattcttttggcacatcttgtgctagaagagttgctttttgtgattta |
53487600 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||| | |||||| |
|
|
| T |
53487601 |
tataattccatttcttattgtt |
53487622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 31863858 - 31863737
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||| |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
31863858 |
catcgcgtaatggtttgttttggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaa |
31863759 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
31863758 |
tataattccatttttgtttgtt |
31863737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 34005486 - 34005365
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||||| |||||||| ||||| |||| ||||||||||| | | ||||||||||||||||||| |||| |
|
|
| T |
34005486 |
catcgcgtaatggtttgttttggttggttgtataactctgtatttgtaaagtagttcttatggcacaccttatactagaagagttgcttttggtggttaa |
34005387 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
34005386 |
tataattccatttttgtttgtt |
34005365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 12881233 - 12881355
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||| || || |||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
12881233 |
catcgcgtaatggttttttatgtttgtttgtatgactctgtgtttgtagagtagctcttttggtacaccttgtgctagaggagttgcttttggtggttaa |
12881332 |
T |
|
| Q |
118 |
tat-aattccatttttgattgtt |
139 |
Q |
| |
|
||| ||||||||| ||||||||| |
|
|
| T |
12881333 |
tataaattccattgttgattgtt |
12881355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 55854386 - 55854278
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||| |
|
|
| T |
55854386 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagttcttttggcacac-------------agttgcttttaatgattaa |
55854300 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
55854299 |
tataattccatttttgattgtt |
55854278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 139
Target Start/End: Original strand, 1844804 - 1844928
Alignment:
| Q |
17 |
acatcacgtaatggtttgttt-tggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgatt |
115 |
Q |
| |
|
||||| ||||||||||| ||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |||||| ||||| || || |
|
|
| T |
1844804 |
acatcgcgtaatggtttttttatgtttgtttgtatgactctgtgtttgtagagtagctcttttggcacaccttgtgctagaggagttgtttttgatggtt |
1844903 |
T |
|
| Q |
116 |
aatat-aattccatttttgattgtt |
139 |
Q |
| |
|
||||| |||||||||||| |||||| |
|
|
| T |
1844904 |
aatataaattccattttttattgtt |
1844928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 10563864 - 10563978
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-at |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| |||| |||| ||||||||||| ||| || ||||||||||||||| |||||||| || |
|
|
| T |
10563864 |
taatggtttgttttggttgtttgtatgactctgttcttgta-agtaattcttctggcacaccttatgctaggggagttgcttttggtgtttaatatatat |
10563962 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
10563963 |
tccatttttgattgtt |
10563978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 29213535 - 29213651
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtg-attaatata-a |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| |||| | |||||||||||||| | | || |||||||||||||||| |||||||| | |
|
|
| T |
29213535 |
taatggtttgttttggttgtttgtatgactctcttcttgtaaagtaattattttggcacaccttatactaggagagttgcttttggtgttttaatatata |
29213634 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
29213635 |
ttccatttttgattgtt |
29213651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 53779630 - 53779514
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtg-attaatata-a |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||| |||| |||||||||||||||||||| || |||||||||||||||| |||||||| | |
|
|
| T |
53779630 |
taatggtttgttttggttgtttgtatgactatgttcttgtaaagtaattcttttggcacaccttgtgctaggagagttgcttttggtgttttaatatata |
53779531 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
|| ||||||| |||||| |
|
|
| T |
53779530 |
tttcattttttattgtt |
53779514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 20395192 - 20395096
Alignment:
| Q |
14 |
tggacatcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtg |
112 |
Q |
| |
|
|||||||| ||| ||||||| |||| |||||||||||||||| | |||||||||||||||||||| |||||||||| | | | ||| ||||||||||| |
|
|
| T |
20395192 |
tggacatcgcgtgatggttt--tttgtttgtttgtatgactctgtgtttgtagagtagctcttttgacacaccttgtactacaggagctgcttttggtg |
20395096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 3000296 - 3000417
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3000296 |
catcacgtaatggtttgttttggttgtttgtatgactctaaatttgtagagtagttcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
3000395 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
3000396 |
tataattccattttttattgtt |
3000417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 151 - 286
Target Start/End: Complemental strand, 12947086 - 12946951
Alignment:
| Q |
151 |
cttattgtttgtattcttnnnnnnncatttgttaatttatatttttgtgtatgcctaaatttgaatatatatttgtggctaggtaaagtcatcctttgtt |
250 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12947086 |
cttattgtttgtattcttaaaaaaatatttgttaatgtatatttttgtgtatgcctaaatttgaatatatatttgtggctaggtaaagtcatcctttgtt |
12946987 |
T |
|
| Q |
251 |
aatttggttcgaaaagatttttcaaatgtaatgatg |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
12946986 |
aatttggttcgaaaagatttttcaaatgtaatgatg |
12946951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 7075704 - 7075583
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
7075704 |
catcacgtaatggtttgttttggttgtttgtatgactctaattttgttgagtagctcttttggcacaccttgtgctagaagagttgcttttgatgattaa |
7075605 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
7075604 |
tataattccattttttattgtt |
7075583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 9393122 - 9393007
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-at |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||| ||| ||||||||||||||| |||||||| || |
|
|
| T |
9393122 |
taatggtttgttttggttgtttgtatgactctatgtttgtaaagtatttcttttggcacaccttgtgctagaggagttgcttttggtggttaatatatat |
9393023 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
9393022 |
ttcattttttattgtt |
9393007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 1379674 - 1379570
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
1379674 |
catcacgtaatggtttgttt-ggttgtttgtttgactctttatttgtagagtagttcttttg----------------aagagttgcttttggtgattaa |
1379592 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1379591 |
tataattccatttttgattgtt |
1379570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 24313978 - 24314086
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| | |||||| |||| || ||| ||||||||||||| ||| ||||||||||||||| |||||||| | |
|
|
| T |
24313978 |
taatggtttgtattggttgtttgttttgactctgtttttgtaaagtaattcgtttagcacaccttgtgctagaggagttgcttttggtg-ttaatatata |
24314076 |
T |
|
| Q |
123 |
ttccattttt |
132 |
Q |
| |
|
|||||||||| |
|
|
| T |
24314077 |
ttccattttt |
24314086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 18704348 - 18704464
Alignment:
| Q |
25 |
taatggtttgtttt-ggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||| | | | | |||| |||||||||||| ||||||| ||| |||||||||||| || |||||||| | |
|
|
| T |
18704348 |
taatggtttgtttttggttgcttgtctgactctttgtatttgcagtaattcttttggcacatcttgtgctagacgagttgcttttgatggttaatatata |
18704447 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
18704448 |
ttccattttttattgtt |
18704464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 30273585 - 30273503
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgctt |
106 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| | |||||| |||| |||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
30273585 |
taatggtttgtattggttgtttgttttgactctgtttttgtaaagtaattcttttagcacaccttgtgctagaggagttgctt |
30273503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 139
Target Start/End: Original strand, 22295919 - 22296000
Alignment:
| Q |
59 |
atttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||| ||| || |||||||| || |||||||| ||| |||||||||||||| |
|
|
| T |
22295919 |
atttgtaaagtagttcttttggcacaccttgtgttagaggaattgcttttaatggttaatatatatttcatttttgattgtt |
22296000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 4416248 - 4416369
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | |
|
|
| T |
4416248 |
catcacgtaatggtttgttttggttgtttgtatgactctaagtttgtagagtagctcttttgacacaccttgtgctagaagagttgcttttggtgattta |
4416347 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
4416348 |
tataattccattttttattgtt |
4416369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 34874983 - 34875107
Alignment:
| Q |
14 |
tggacatcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtga |
113 |
Q |
| |
|
|||||||| |||||| |||| |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| | | || ||||||||||| |
|
|
| T |
34874983 |
tggacatcgcgtaatagttt--tttgtttgtttgtatgactctgtgtttgtagagtagctcttttggcacaccttgtgctacagaagctgcttttggtgg |
34875080 |
T |
|
| Q |
114 |
ttaatat-aattccatttttgattgtt |
139 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
34875081 |
ttaatataaattccatttttgattgtt |
34875107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 27895442 - 27895376
Alignment:
| Q |
73 |
tcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27895442 |
tcttttggcacaccttgtgccaaaagagttgcttttggtggttaatataattccatttttgattgtt |
27895376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 139
Target Start/End: Complemental strand, 6048804 - 6048707
Alignment:
| Q |
43 |
gtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||||||||| ||| ||| ||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
6048804 |
gtttgtatgactctgtgtttgtagagtagttcttttggcacaccttatgctagaggagttgcttttggtggttaatatatattccattttttattgtt |
6048707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 4922819 - 4922705
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-at |
123 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| | |||||| |||| |||||| ||||||||| ||| ||| ||||||||||||||| |||||||| || |
|
|
| T |
4922819 |
taatggtttgtattggttgtttgtttgactctgtttttgtaaagtaattcttttagcacaccttatgctagaggagttgcttttggtg-ttaatatatat |
4922721 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4922720 |
tccatttttgattgtt |
4922705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 20209274 - 20209389
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
||||||||||| |||||||||||| | |||||| | |||||| |||| |||||| ||||||||||||| ||| ||||||||||||||| |||||||| | |
|
|
| T |
20209274 |
taatggtttgtattggttgtttgttttgactctgtttttgtaaagtaattcttttagcacaccttgtgctagaggagttgcttttggtg-ttaatatata |
20209372 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
20209373 |
ttccatttttgattgtt |
20209389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 8892071 - 8891966
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttg |
133 |
Q |
| |
|
||||| |||||||||||||| | | |||||||||||||||||||||||| |||||||| | | ||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
8892071 |
ttttgtttgtttgtatgactatgtgtttgtagagtagctcttttggcacgccttgtgctataggagctgcttttggtggttaatatatatcccatttttt |
8891972 |
T |
|
| Q |
134 |
attgtt |
139 |
Q |
| |
|
|||||| |
|
|
| T |
8891971 |
attgtt |
8891966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 7001327 - 7001432
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttg |
133 |
Q |
| |
|
||||| |||||||||||||| | | ||||||||||||||||||||| || |||| ||| | | ||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
7001327 |
ttttgtttgtttgtatgactttgtgtttgtagagtagctcttttggtacgccttatgctataggagctgcttttggtggttaatatatatcccatttttt |
7001426 |
T |
|
| Q |
134 |
attgtt |
139 |
Q |
| |
|
|||||| |
|
|
| T |
7001427 |
attgtt |
7001432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 40089872 - 40089807
Alignment:
| Q |
76 |
tttggcacaccttgtgccagaagagtt-gcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||| ||| | ||| |||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
40089872 |
tttggcacaccttgtgctagaggggttcgcttttggtggttaatatatattacatttttgattgtt |
40089807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 40292633 - 40292753
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
40292633 |
catcacgtaatggtttgttt-ggttgtttgtttgactctttatttgtagagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaa |
40292731 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40292732 |
tataattccatttttgattgtt |
40292753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 17707588 - 17707467
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
17707588 |
catcacgtaatggtttgttttggttgtttgtatgactctaagtttgtagagtagctcttttagcacaccttgtgctagaagagttgcttgtggtgattaa |
17707489 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||| | |||||||||||| |
|
|
| T |
17707488 |
tataatttcttttttgattgtt |
17707467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 9903813 - 9903934
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||| ||||||||||| | ||||||||||||||||||| |||| |
|
|
| T |
9903813 |
catcgcgtaatggtttgttttggttgtttgtatgactctgtgtttgtagagtagttcttttagcacaccttgtactagaagagttgcttttggtggttaa |
9903912 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9903913 |
cataattccatttttgattgtt |
9903934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 10722629 - 10722510
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
10722629 |
catcgcgtaatggtttgttttggttgtttgtatgactgtat--ttgtaaagtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaa |
10722532 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
10722531 |
tataattccatttttgtttgtt |
10722510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 30111478 - 30111593
Alignment:
| Q |
24 |
gtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataat |
123 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
30111478 |
gtaatggtttgctttagttgtttgtatgactctatggttgtaaagtagttcttttggcacaccttgtgctagaagagttgtttttgatgattaatataat |
30111577 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30111578 |
tccatttttgattgtt |
30111593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 10711675 - 10711773
Alignment:
| Q |
41 |
ttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
10711675 |
ttgtttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtgctagaagagttgcttttggtggttaatataatttcatttttgattgtt |
10711773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 25592034 - 25592143
Alignment:
| Q |
30 |
gtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccatt |
129 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25592034 |
gtttgttttggttggttgtataactctgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaatataattccatt |
25592133 |
T |
|
| Q |
130 |
tttgattgtt |
139 |
Q |
| |
|
|||| ||||| |
|
|
| T |
25592134 |
tttgtttgtt |
25592143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 49968919 - 49968797
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||| | |||||| |||||||||||| ||||||||||||| ||| |||||||||||||| |||| |
|
|
| T |
49968919 |
catcgcgtaatggtttcttatggttgtttgtatgactctgtgtttgtaaagtagctcttttagcacaccttgtgctagagaagttgcttttggtggttaa |
49968820 |
T |
|
| Q |
118 |
tat-aattccatttttgattgtt |
139 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
49968819 |
tataaattccatttttgattgtt |
49968797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 41061699 - 41061814
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-a |
122 |
Q |
| |
|
||||||||||| |||||||||||| | |||| | | ||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||| | |
|
|
| T |
41061699 |
taatggtttgtattggttgtttgttttgactatgtttttgtagagtaattcttttagcacaccttgtgctagaagagttgcttttggtg-ttaatatata |
41061797 |
T |
|
| Q |
123 |
ttccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41061798 |
ttccatttttgattgtt |
41061814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 1395037 - 1395103
Alignment:
| Q |
73 |
tcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
1395037 |
tcttttggcacaccttgtgctagaagagttgtttttggtggttaatataattccatttttgattgtt |
1395103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 47107254 - 47107334
Alignment:
| Q |
60 |
tttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||| |||||||||||||||||| | ||| |||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
47107254 |
tttgtagagtagttcttttggcacaccttgtactagaggagttgcttttggtagttaatatatatttcatttttgattgtt |
47107334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 41181788 - 41181683
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttg |
133 |
Q |
| |
|
||||| |||||||||||||| | | |||||| ||||||||||||| ||| | |||||| | | ||| ||||||||||| |||||||| || |||||||| |
|
|
| T |
41181788 |
ttttgtttgtttgtatgactatgtgtttgtatagtagctcttttgacacgcattgtgctataggagctgcttttggtggttaatatatatcccatttttt |
41181689 |
T |
|
| Q |
134 |
attgtt |
139 |
Q |
| |
|
|||||| |
|
|
| T |
41181688 |
attgtt |
41181683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 12173743 - 12173676
Alignment:
| Q |
73 |
tcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||| |||| ||| |||||||| |||||||||||| ||||| |
|
|
| T |
12173743 |
tcttttggcacatcttgtgctagaggagttgttttttgtggttaatatatattccatttttgtttgtt |
12173676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 47586856 - 47586791
Alignment:
| Q |
76 |
tttggcacaccttgtgccagaagagtt-gcttttggtgattaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| ||| ||||| |||||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
47586856 |
tttggcacaccttgtgttagaggagtttgcttttggtggttaatatatattccatttttgtttgtt |
47586791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 17079739 - 17079860
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||| ||||||||| |||| |
|
|
| T |
17079739 |
catcgcgtaatggtttgttttggttgtttgtatgactctgtatttgtaaagtagttcttttggcacaccttgtgctagaagagtttcttttggtggttaa |
17079838 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
17079839 |
tataattccatttttgattgtt |
17079860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 6831485 - 6831600
Alignment:
| Q |
24 |
gtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataat |
123 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6831485 |
gtaatggtttgctttggttgtttgtatgactctatggttgtaaagtagttcttttggcacaccttgtgctagaagagttgcttttggtgattaatataat |
6831584 |
T |
|
| Q |
124 |
tccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6831585 |
tccatttttgattgtt |
6831600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 9199800 - 9199898
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| || ||| |||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||| |
|
|
| T |
9199800 |
catcacgtaattgtttgttt-ggttgtttgtacgattctttatttgtagagtagttcttttgacacaccttgtgctagaagagttgcttttggtgattaa |
9199898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 26526127 - 26526001
Alignment:
| Q |
14 |
tggacatcacgtaatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtg |
112 |
Q |
| |
|
|||||||| | ||||||||||| |||||||||| | | |||||||| |||||| |||| |||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
26526127 |
tggacatcgcttaatggtttgtattggttgtttattttgactctatttttgtacagtaattcttttagcacaccttgtgctagagaagttgcttttggtg |
26526028 |
T |
|
| Q |
113 |
attaatata-attccatttttgattgtt |
139 |
Q |
| |
|
|||||||| ||||||||||| |||||| |
|
|
| T |
26526027 |
-ttaatatatattccattttttattgtt |
26526001 |
T |
|
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Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 135
Target Start/End: Original strand, 11061430 - 11061520
Alignment:
| Q |
46 |
tgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttgat |
135 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||| | ||| ||||||||||| ||| |||| |||||||||||||| |
|
|
| T |
11061430 |
tgtatgactctgtgtttgtagagtagctcttttggcacaccttgtgctacttgagctgcttttggtggttattatatattccatttttgat |
11061520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 17874361 - 17874471
Alignment:
| Q |
30 |
gtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccat |
128 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||| |||| ||||||| |||||| || ||||||||||||||| |||||||| ||||||| |
|
|
| T |
17874361 |
gtttgttttggttgtttgtatgactctgttcttgtaaagtaattcttctggcacaacttgtgttaggggagttgcttttggtgtttaatatatattccat |
17874460 |
T |
|
| Q |
129 |
ttttgattgtt |
139 |
Q |
| |
|
|||| |||||| |
|
|
| T |
17874461 |
tttttattgtt |
17874471 |
T |
|
Back To:
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Target: scaffold0481 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 1469 - 1344
Alignment:
| Q |
14 |
tggacatcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtga |
113 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||| | |||||||| |||| |||| |
|
|
| T |
1469 |
tggacatcatgtaatggtttattttggttgtttgtatgactctatgtttatagagtagttctttcggcacaccttgtgctaaaagagttgtttttagtga |
1370 |
T |
|
| Q |
114 |
ttaatataattccatttttgattgtt |
139 |
Q |
| |
|
||||||||||||||||||| |||||| |
|
|
| T |
1369 |
ttaatataattccattttttattgtt |
1344 |
T |
|
Back To:
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Target: scaffold0007 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 181721 - 181600
Alignment:
| Q |
18 |
catcacgtaatggtttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||| | |||||||| ||||| |||| ||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
181721 |
catcgcgtaatggtttgttttggttggttgtataactttgtatttgtaaagtagttcttgtggcacaccttgtgctagaagagttgcttttggtggttaa |
181622 |
T |
|
| Q |
118 |
tataattccatttttgattgtt |
139 |
Q |
| |
|
|||||||||||||||| ||||| |
|
|
| T |
181621 |
tataattccatttttgtttgtt |
181600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0308 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0308
Description:
Target: scaffold0308; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 35 - 139
Target Start/End: Complemental strand, 11655 - 11550
Alignment:
| Q |
35 |
ttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatata-attccatttttg |
133 |
Q |
| |
|
||||| ||||||||||| |||| | |||||||||||||||||||||||| |||||||| | | ||| ||||||||||| |||||||| || ||||||||| |
|
|
| T |
11655 |
ttttgtttgtttgtatggctctgtgtttgtagagtagctcttttggcacgccttgtgctataggagctgcttttggtggttaatatatatcccatttttg |
11556 |
T |
|
| Q |
134 |
attgtt |
139 |
Q |
| |
|
|||||| |
|
|
| T |
11555 |
attgtt |
11550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0765 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0765
Description:
Target: scaffold0765; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 1348 - 1455
Alignment:
| Q |
31 |
tttgttttggttgtttgtatgactctatatttgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccattt |
130 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||| |||| |||| ||||||||||||||| || ||||||||||||||| |||||||| |||||||| |
|
|
| T |
1348 |
tttgttttggttatttgtatgactctgttcttgta-agtaattcttctggcacaccttgtgctaggagagttgcttttggtatttaatatatttccattt |
1446 |
T |
|
| Q |
131 |
ttgattgtt |
139 |
Q |
| |
|
||| ||||| |
|
|
| T |
1447 |
ttgtttgtt |
1455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 8380 - 8457
Alignment:
| Q |
62 |
tgtagagtagctcttttggcacaccttgtgccagaagagttgcttttggtgattaatataattccatttttgattgtt |
139 |
Q |
| |
|
|||| ||||| |||| |||||| ||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
8380 |
tgtatagtagttcttgtggcacgtcttgtgctagaagagttgcttttggtggttaatataattccatttttgtttgtt |
8457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0179 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0179
Description:
Target: scaffold0179; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 7113 - 6997
Alignment:
| Q |
25 |
taatggtttgttttggttgtttgtat-gactctatatttgtagagtagctcttttggcacaccttgtgc-cagaagagttgcttttggtgattaatata- |
121 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||| ||||||||||| |||||| |||||| |||||| ||| ||||||||| ||||| |||||||| |
|
|
| T |
7113 |
taatggtttgtattggttgtttgttttgactctatttttgtagagtaattcttttagcacactttgtgcttagaggagttgcttctggtg-ttaatatat |
7015 |
T |
|
| Q |
122 |
attccatttttgattgtt |
139 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
7014 |
attccattttttattgtt |
6997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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