View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7130_high_1 (Length: 657)
Name: NF7130_high_1
Description: NF7130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7130_high_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 638
Target Start/End: Original strand, 52807548 - 52808185
Alignment:
| Q |
1 |
gaaaattgaagattcaaccacagcacgatgacgaacgaggggcgggagggggagaaaacgaagaacaaaacgaacatgcaacacgatatggggacgaggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807548 |
gaaaattgaagattcaaccacagcacgatgacgaacgaggggcgggagggggagaaaatgaagaacaaaacgaacatgcaacacgatatggggacgaggt |
52807647 |
T |
|
| Q |
101 |
cggtgagagaatacatgagtgaaagttgacagccctagttaggtagatgcctaaaaaatcatgtgttttaaaggtataaagcaccccccttatttgtcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52807648 |
cggtgagagaatacatgagtgaaagttgacagccctagttaggtagatgcctaaaaaatcatgtgttttaaaggtataaagcaccccccttatttgtcac |
52807747 |
T |
|
| Q |
201 |
tctaggagagtctggaatatatcaattgaggtttgttaatgatttcaaatctcctagaacttgcttcaaaatttcagtgacattgtgttcaaattttagg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52807748 |
tctaggagagtctggaatatatcaattgaggtttgttaatgatttcaaatctcctagaacttgcttcaaaatttcagtgacattgtgttcaaattttagg |
52807847 |
T |
|
| Q |
301 |
gtaaaaagacagctgcagcaggtattttatttctttaagtccagcctagtggacctatactagattactataatacttgcattgaggtttatgcgggtcg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52807848 |
gtaaaaagacagctgcagcaggtattttatttctttaagtccagcctagtggacctatactagattactataatacttgcattgaggtttatgcgggtcg |
52807947 |
T |
|
| Q |
401 |
tattatcatcacaggtgatgacaggaatggcatccaaaccaaggaccttagtaaacttgcgcattgttgggtatagaaggggccagatcaaactaatatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52807948 |
tattatcatcacaggtgatgacaggaatggcatccaaaccaaggaccttagtaaacttgcgcattgttgggtatagaaggggccagatcaaactaatatg |
52808047 |
T |
|
| Q |
501 |
gattttatttttctcaagaggagatatgtaatcaatttgacgtttgaggaaacacatactctagaagctaaagtggtagatgttctaaaggatcaatttg |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
52808048 |
gattttatttttctcaagaggagatatgtaatcaatttgacgtttgaggaaacacatactctagaagctaaagtggtagatattctaaaggatcaatttg |
52808147 |
T |
|
| Q |
601 |
aaagctaataactagtttacttgattaagattcatttt |
638 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52808148 |
aaagctaataactagtttacttgattaagattcatttt |
52808185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 224 - 433
Target Start/End: Complemental strand, 54140288 - 54140082
Alignment:
| Q |
224 |
aattgaggtttgttaatgatttcaaatctcctagaacttgcttcaaaatttcagtgacattgtgttcaaattttagggtaaaaagacagctgcagcaggt |
323 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
54140288 |
aattgaggtttgttaatggtttcaaatcttctagaacttgcttcaaaatttcagtaacattgtgttcaaattttagggtaaa-------ctgcagcaggt |
54140196 |
T |
|
| Q |
324 |
attttatttc----tttaagtccagcctagtggacctatactagattactataatacttgcattgaggtttatgcgggtcgtattatcatcacaggtgat |
419 |
Q |
| |
|
|||||||||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| |||| | || |
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|
| T |
54140195 |
attttatttcaaggaaccaaaccaacccagtggacctatactagattactataatacttgcattgaggtttatgcagatcatattatcattacagataat |
54140096 |
T |
|
| Q |
420 |
gacaggaatggcat |
433 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
54140095 |
gacaggaatggcat |
54140082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 443 - 638
Target Start/End: Complemental strand, 54140034 - 54139830
Alignment:
| Q |
443 |
ggaccttagtaaacttgcgcattgttgggta-tagaaggggccagatcaaactaa----tatggattttatttttctcaagaggagatatgtaatcaatt |
537 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||||| ||||| |||||||||| || ||||||||||| ||||| |||||||||| ||||||||| |
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|
| T |
54140034 |
ggaccttagtaaacttgggcattgttggggaatagaagaggccaaatcaaactaactaataaggattttatttatctcaggaggagatatctaatcaatt |
54139935 |
T |
|
| Q |
538 |
tgacgtttgaggaaacacatactctagaa----gctaaagtggtagatgttctaaaggatcaatttgaaagctaataactagtttacttgattaagattc |
633 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |||||||||| |||| ||| |||||||||| ||| ||||||||||||||||||||| | ||||| |
|
|
| T |
54139934 |
tgacatttgaggaaacacgtactctagaagctagctaaagtggcagatattcaaaaggatcaaccggaacgctaataactagtttacttgactgcgattc |
54139835 |
T |
|
| Q |
634 |
atttt |
638 |
Q |
| |
|
||||| |
|
|
| T |
54139834 |
atttt |
54139830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 526 - 624
Target Start/End: Complemental strand, 53286921 - 53286823
Alignment:
| Q |
526 |
atgtaatcaatttgacgtttgaggaaacacatactctagaagctaaagtggtagatgttctaaaggatcaatttgaaagctaataactagtttacttga |
624 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
53286921 |
atgtaatcagtttgacatttgaggaaacacatactctagaagctaaagtggtagatattctaaaggatcaactggaaagctaatatctagtttacttga |
53286823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 54140348 - 54140298
Alignment:
| Q |
76 |
atgcaacacgatatggggacgaggtcggtgagagaatacatgagtgaaagt |
126 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
54140348 |
atgcaacacaatatggggatgaggtcggtgatagaatatatgagtgaaagt |
54140298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 484 - 531
Target Start/End: Complemental strand, 1924514 - 1924467
Alignment:
| Q |
484 |
cagatcaaactaatatggattttatttttctcaagaggagatatgtaa |
531 |
Q |
| |
|
||||||||||||||| | ||| ||||||||||||||||| |||||||| |
|
|
| T |
1924514 |
cagatcaaactaataagaattatatttttctcaagaggaaatatgtaa |
1924467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 442 - 638
Target Start/End: Complemental strand, 23707443 - 23707248
Alignment:
| Q |
442 |
aggaccttagtaaacttgcgcattgttggg-tatagaaggggccagatcaaactaatatggattttatttttctcaagaggagatatgtaatcaatttga |
540 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
23707443 |
aggaccttagtaaacttaggcattgttggggtatagaagaggccagatcaaactaataaggattttatgtttctcaagaggagatatgtaagcaatttga |
23707344 |
T |
|
| Q |
541 |
cgtttgaggaaacacatactctagaagctaaagtggtagatgttctaaaggatcaatttgaaagctaataactagtttacttgattaagattcatttt |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
23707343 |
cgtttgaggaaacacatactctagaagctaaagtggtagatattctaa--tttcaattggaaagctaataactagtttacttgactgtgattcatttt |
23707248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 226 - 433
Target Start/End: Complemental strand, 23707695 - 23707489
Alignment:
| Q |
226 |
ttgaggtttgttaatgatttcaaatctcctagaacttgcttcaaaatttcagtgacattgtgttcaaattttagggtaaaaagacagctgcagcaggtat |
325 |
Q |
| |
|
|||| ||||||||||| || |||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23707695 |
ttgaagtttgttaatggttccaaatctcctagaatttgcttcaaaatttcagtaacgctgtgttcaaattttagggtaaaaagacagctgcagcaggtat |
23707596 |
T |
|
| Q |
326 |
tttatttctttaag--tccagcctagtggacctatactagattactataatacttgcattgaggtttatgcgggtcgtattatcatcacaggtgatgaca |
423 |
Q |
| |
|
|||||||||| ||| ||| |||||||||| | |||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
23707595 |
tttatttcttcaaggcaccaacctagtggacttgtactagattactatgatacttgcattgaggtttatgcgg---atattatcatcacagatgatgaca |
23707499 |
T |
|
| Q |
424 |
ggaatggcat |
433 |
Q |
| |
|
|||||||||| |
|
|
| T |
23707498 |
ggaatggcat |
23707489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 23707784 - 23707709
Alignment:
| Q |
49 |
ggggagaaaacgaagaacaaaacgaacatgcaacacgatatggggacgaggtcggtgagagaatacatgagtgaaa |
124 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||| |
|
|
| T |
23707784 |
ggggagaaaaggaagaacaaaaaaaacatgcaacacgatatggggacaaggtcggtgatagaatagatgagtgaaa |
23707709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 435 - 638
Target Start/End: Original strand, 48431665 - 48431865
Alignment:
| Q |
435 |
caaaccaaggaccttagtaaacttgcgcattgttgggtatagaaggggccagatcaaactaatatggattttatttttctcaagaggagatatgtaatca |
534 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||| ||||||||||||||| |||||||||||||||| || |
|
|
| T |
48431665 |
caaaccaaggaccttagtaaacttgggcattgttgggtataaaagagaccagatcaaactaataaggattttatttttcttaagaggagatatgtaacca |
48431764 |
T |
|
| Q |
535 |
atttgacgtttgaggaaacacatactctagaagctaaagtggtagatgttctaaaggatcaatttgaaagctaataactagtttacttgattaagattca |
634 |
Q |
| |
|
|| | || |||||| ||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||| || |||||| |
|
|
| T |
48431765 |
atct---gtagaaggaaagacatactctagaagctaaactggtagaaattctaaaggatcagttgaaaagctaataactagtttacttggttgtgattca |
48431861 |
T |
|
| Q |
635 |
tttt |
638 |
Q |
| |
|
|||| |
|
|
| T |
48431862 |
tttt |
48431865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 526 - 624
Target Start/End: Original strand, 11842814 - 11842914
Alignment:
| Q |
526 |
atgtaatcaatttgacgtttgaggaaacacatactctagaagctaaagtggtagatgt--tctaaaggatcaatttgaaagctaataactagtttacttg |
623 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
11842814 |
atgtaatcagtttgacatttgaggaaacacatactctagaagctaaagtggtagatattgtctaaaggatcaactggaaagctaatatctagtttacttg |
11842913 |
T |
|
| Q |
624 |
a |
624 |
Q |
| |
|
| |
|
|
| T |
11842914 |
a |
11842914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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