View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7130_high_2 (Length: 451)
Name: NF7130_high_2
Description: NF7130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7130_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Original strand, 32110083 - 32110502
Alignment:
| Q |
20 |
tcctcactgtcacttgttcctgacaaaacttgttgcacacttgaattgtcatttgtgagcttgctaggacgagggcgttgatgaatgtgttctcctttat |
119 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32110083 |
tcctcactgtcacttgttcctgataaaacttgttgcacacttgaattgtcatttgtgagcttgctaggacgagggcgttgatgaatgtgttctcctttat |
32110182 |
T |
|
| Q |
120 |
aaataattgcagttacatgaccatcaacaggatcgcgttcaacttttttcgtcacaagacagcttggatgtgtacatttgtaataacttcgaggaaactc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32110183 |
aaataattgcagttacatgaccatcaacaggatcgcgttcaacttttttcgtcacaagacagcttggatgtgtacatttgtaataacttcgaggaaactc |
32110282 |
T |
|
| Q |
220 |
gcaacctttcacttgtttttgtccatacttcctccagttgtagccatcgtcattagccttgtcaacattcacagaagaagacttctgtaatctttgttcc |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
32110283 |
gcaacctttcacttgtttttgtccatacttcctccagttgtagccgtcgtcattagccttgtcaacattcacaaaagaagacttctgtaatctttgttcc |
32110382 |
T |
|
| Q |
320 |
gagttagaagaatactcaacagagttcggtatcagttgttgtgcaatgttgttgaatgttattgctggaacttgtgtcaatgaggtagtggtaggcacta |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
32110383 |
gagttagaagaatactcaacagagttcggtatcagttgttgtgcaatgttgttgaatgttattgcaggaacttgtgtcaatgaggtagtggtaggcacta |
32110482 |
T |
|
| Q |
420 |
ctgatacagaaaattgatgt |
439 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
32110483 |
ctgatacagaaaattgatgt |
32110502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 99 - 267
Target Start/End: Original strand, 18876227 - 18876392
Alignment:
| Q |
99 |
gatgaatgtgttctcctttataaataattgcagttacatgaccatcaacaggatcgcgttcaacttttttcgtcacaagacagcttggatgtgtacattt |
198 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||| ||||||| ||| | | || ||||| |||||| | ||| ||||| | ||||| || || || |
|
|
| T |
18876227 |
gatgattgtgctctcctttataaataattgcggttatatgaccagcaagcgaa---cgctcaacctttttcttgacaggacagttaggatgcgtgcactt |
18876323 |
T |
|
| Q |
199 |
gtaataacttcgaggaaactcgcaacctttcacttgtttttgtccatacttcctccagttgtagccatc |
267 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| ||||| || |||||||||||||||||||| |
|
|
| T |
18876324 |
gtaataacttcgaggaaactcgctacctttcacctgtttctgtccgtatttcctccagttgtagccatc |
18876392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 40471444 - 40471514
Alignment:
| Q |
197 |
ttgtaataacttcgaggaaactcgcaacctttcacttgtttttgtccatacttcctccagttgtagccatc |
267 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||| || |||||||| || |||||||| || ||||| |
|
|
| T |
40471444 |
ttgtaataacttcgaggatactcgcttccttttacttgcttctgtccatattttctccagttatatccatc |
40471514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University