View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7130_high_4 (Length: 440)
Name: NF7130_high_4
Description: NF7130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7130_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 138 - 422
Target Start/End: Original strand, 4041234 - 4041522
Alignment:
| Q |
138 |
atatatataactctcacttttcatatatattnnnnnnnttgctagtataagaaacaaattatgatttcattcatcacctaacttaactgacaacgtcgag |
237 |
Q |
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| T |
4041234 |
atatatataactctcacttttcatatatattaaaaaaattgctagtataagatacaaattatgatttcattcatcacctagcttaactgacaacgtcgag |
4041333 |
T |
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| Q |
238 |
attattaaactgaacactttctatggttatacccgagttcaaacctaaaatctctctttaatgtgcgtaagttttcaagcag---ttgtcacatatnnnn |
334 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
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| T |
4041334 |
attattaaactgaacactttctgtggttatacccgagttcaaacctaaaatctctctttaatgtgcgtaagctttcaagcggtgtttgtcacatataaaa |
4041433 |
T |
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| Q |
335 |
nnncatttgcttctatt-tagacttatagtgaaatggattcttctgatttctcaattagcttccacgtggtagaagagcattgaacaat |
422 |
Q |
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| T |
4041434 |
aaacatttgcttcaattctagacttatagtgaaatggattcttctgatttctcaattagcttccacgtggtagaagagcattgaacaat |
4041522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 4041053 - 4041177
Alignment:
| Q |
7 |
tttggtggtgcgggtcgagtggatctaagtgttgcggattaagtatagcgatgtgaaagatttggatttaaaaggagattgttggaattcaagtggaagt |
106 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
4041053 |
tttggtggtgcggatcgagtggatctaagtgtcgcggattaagtatagcgatgtgaaagatttggacttaaaaggagattgttggaattcaagtgtgagt |
4041152 |
T |
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| Q |
107 |
tgttagtcttatatcggctataagt |
131 |
Q |
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| T |
4041153 |
tgttagtcttatatcggctataagt |
4041177 |
T |
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