View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7130_low_5 (Length: 435)
Name: NF7130_low_5
Description: NF7130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7130_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 134 - 429
Target Start/End: Complemental strand, 32974183 - 32973890
Alignment:
| Q |
134 |
tgtttgtgtgagtgggagaaaagagccaagtagaggtggaagattttcttcacctatttgtcaagtagaaagttgtggagctgatttaactttttcaaag |
233 |
Q |
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| T |
32974183 |
tgtttgtgtgagtgggagaaaagagccaagtagaggtggaagattttcttcacctatttgtcaagtagaaagttgtggagctgatttaactttttcaaag |
32974084 |
T |
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| Q |
234 |
agatatcatcgtcgccataaggtttgtgaggttcattccaaagcatctgttgtggtggttgcagggatgaggcaaaggttttgccaacaatgtagcaggt |
333 |
Q |
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| T |
32974083 |
agatatcatcgtcgccataaggtttgtgaggttcattccaaagcatctgttgtggtggttgcagggatgaggcaaaggttttgccaacaatgtagcaggt |
32973984 |
T |
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| Q |
334 |
gtgatcaatctccatcctccactatcatctcaacnnnnnnnnnngttggtttgaataggtttttccgtaagcacttttcactagtagtataatgta |
429 |
Q |
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| T |
32973983 |
gtgatcaatctccatcctccactatcatctgaac--ttttttttgttggtttgaataggtttttccgtaagcacttttcactagtagtatagtgta |
32973890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 32974299 - 32974247
Alignment:
| Q |
18 |
acaatggaagggaagcaaacatcagttgagaaggtttggaaagacatcatatt |
70 |
Q |
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| T |
32974299 |
acaatggaagggaagcaaacatcagttgagaaggtttggaaagacatcatatt |
32974247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 333
Target Start/End: Complemental strand, 22198073 - 22197947
Alignment:
| Q |
207 |
tgtggagctgatttaactttttcaaagagatatcatcgtcgccataaggtttgtgaggttcattccaaagcatctgttgtggtggttgcagggatgaggc |
306 |
Q |
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| T |
22198073 |
tgtggagctgatttgactgatgcaaagagatatcatcgccgccataaagtgtgcgagtttcattccaaggcacctgttgtggtggttgcagggatgaggc |
22197974 |
T |
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| Q |
307 |
aaaggttttgccaacaatgtagcaggt |
333 |
Q |
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| T |
22197973 |
agaggttttgtcaacaatgtagcaggt |
22197947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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