View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7130_low_6 (Length: 318)
Name: NF7130_low_6
Description: NF7130
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7130_low_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 34953669 - 34953356
Alignment:
| Q |
1 |
atataattaacaaataaattacagagtaatacacaaactacaaaaacacaaatttgcaacaaaagttttcaagaatactaattccgatacttacgtgttc |
100 |
Q |
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| T |
34953669 |
atataattaacaaataaattacagagtaatacacaaactacaaaaacacaaatttgcaacaaaagttttcaagaatactaattccgatacttacgtgttc |
34953570 |
T |
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| Q |
101 |
ttaatggttaaaacctcctccatttgctttccctttacccattcagtagctgcaaatnnnnnnnnnnnnnnctttgaattagaagcataatagttaatta |
200 |
Q |
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| T |
34953569 |
ttaatggttaaaacctcctccatttgctttccctttacccattcagtagctgcaaat-aaaaataaaaaaactttgaattagaagcataatagttaatta |
34953471 |
T |
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| Q |
201 |
attaatgaaagaacacaattaacaataacataatcacaatcataaaattctaagaaaagaaacaaacaattcaatnnnnnnnnngggaaatttaaaattc |
300 |
Q |
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| T |
34953470 |
attaacgaaagaacacaattaacaataccataatcacaatcataaaattctaagaagagaaacaaacaattcaat---aaaaaagggaaatttaaaattc |
34953374 |
T |
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| Q |
301 |
aaacaccgcaaaaagaac |
318 |
Q |
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| T |
34953373 |
aaacaccgcaaaaagaac |
34953356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 34944772 - 34944704
Alignment:
| Q |
88 |
tacttacgtgttcttaatggttaaaacctcctccatttgctttccctttacccattcagtagctgcaaa |
156 |
Q |
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| T |
34944772 |
tacttaagcgttcttgatggttaaaacctcctccatttgctttccctttacccactcagtacctgcaaa |
34944704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 34957738 - 34957670
Alignment:
| Q |
88 |
tacttacgtgttcttaatggttaaaacctcctccatttgctttccctttacccattcagtagctgcaaa |
156 |
Q |
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| T |
34957738 |
tacttacgtgttcttaatggttaaaacctcctcgattgtctttcgctttacccattcggtagctgcaaa |
34957670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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