View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7132_high_1 (Length: 454)
Name: NF7132_high_1
Description: NF7132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7132_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Original strand, 10880098 - 10880549
Alignment:
| Q |
1 |
gattggttacattctctttattggtgacgacttaaataggagcatgggtgaagaagtcatactatgtggtatgacttcgacttaatatagggagtttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10880098 |
gattggttacattctctttattggtgacgacttaaataggagcatgggtgaagaagtcatactatgtggtatgacttcgacttaatatagggagtttgag |
10880197 |
T |
|
| Q |
101 |
gattgggagtctcgtagcaatttccttttcctttcccttagatggtgtttttggtttagaaatcgaggtatgatttttgttagcttggaggaaacatctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10880198 |
gattgggagtctcgtagcaatttccttttcctttcccttagatggtgtttttggtttagaaatcgaggtatgatttttgttagcttggaggaaacatctt |
10880297 |
T |
|
| Q |
201 |
ttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttgcatggaacttcagtttgagatggacagtggaacatgcagctctcagctcca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10880298 |
ttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttgcatggaacttcagtttgagatggacagtggaacatgcagctctcagctcca |
10880397 |
T |
|
| Q |
301 |
ccaataatggtctccatatgatgtaattgtagagataagaaatcaatcacaaggaactgaactttcaccgtctttcttgctcctccttggccaaaagtga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10880398 |
ccaataatggtctccatatgatgtaattgtagagataagaaatcaatcacaaggaactgaactttcaccgtctttcttgctcctccttggccaaaagtga |
10880497 |
T |
|
| Q |
401 |
tcagttactccacataacccaagggttttgttgaggatccgttgaatccata |
452 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10880498 |
tcagttactccacataatccaagggttttgttgaggatccgttgaatccata |
10880549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 10918554 - 10919003
Alignment:
| Q |
1 |
gattggttacattctctttattggtgacgacttaaataggagcatgggtgaagaagtcatactatgtggtatgacttcgacttaatatagggagtttgag |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
10918554 |
gattggttacatcctctttattggtgacgatttaaatatgagcatgggtgaagtagacatactatgtggtatgactttgacttaatatagggaggctgag |
10918653 |
T |
|
| Q |
101 |
gattgggagtctcgtagcaatttccttttcctttcccttagatggtgtttttggtttagaaatcgaggtatgatttttgttagcttggaggaaacatctt |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |
|
|
| T |
10918654 |
gactgggagtctcgtagcaatttccttttcctttccctaagatggtgtttttggtttggaaatcgaggtctga--tttgttagcttggaggaaacatatt |
10918751 |
T |
|
| Q |
201 |
ttggaaatctcaatgtctccgtgcagtatggcgatggtgtcatctgttgcatggaacttcagtttgagatggacagtggaacatgcagctctcagctcca |
300 |
Q |
| |
|
|||| || ||||||||||||| ||| ||||||||||||||||||| || |||| |||||| |||||||||| |||| ||||||||||||||||| | |
|
|
| T |
10918752 |
ttggcaacctcaatgtctccgcgcaatatggcgatggtgtcatctttttcatgctacttcattttgagatgggcagttgaacatgcagctctcagatttg |
10918851 |
T |
|
| Q |
301 |
ccaataatggtctccatatgatgtaattgt--agagataagaaatcaatcacaaggaactgaactttcaccgtctttcttgctcctccttggccaaaagt |
398 |
Q |
| |
|
|||| |||||||| ||| ||| |||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
10918852 |
acaatgttggtctccctatcatgcaattgtagagagacaagcaatcaatcacaaggaactgaactttcaccgtctttctttctcttccttggccgaaagt |
10918951 |
T |
|
| Q |
399 |
gatcag-ttactccacataacccaagggttttgttgaggatccgttgaatcc |
449 |
Q |
| |
|
|||||| |||||| ||||||||| |||| ||||||||||| ||||||||||| |
|
|
| T |
10918952 |
gatcagtttactcaacataaccccagggatttgttgaggagccgttgaatcc |
10919003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University