View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7132_low_6 (Length: 209)
Name: NF7132_low_6
Description: NF7132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7132_low_6 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 89; Significance: 4e-43; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 6448036 - 6447944
Alignment:
| Q |
24 |
aagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcagtggtgcatcagttgcaatctcatctaa |
116 |
Q |
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| T |
6448036 |
aagagttggaatgaagttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcactggtgcatcagttgcaatctcatctaa |
6447944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 5250969 - 5251092
Alignment:
| Q |
49 |
ttgctagtagaaggttgagattcggccttcagcttcttcagtggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttga |
148 |
Q |
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| T |
5250969 |
ttgctagtagaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaa |
5251068 |
T |
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| Q |
149 |
catcaccaagccacttcttcacgt |
172 |
Q |
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| T |
5251069 |
gatcatcaagccacttcttcacgt |
5251092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 5268856 - 5268979
Alignment:
| Q |
49 |
ttgctagtagaaggttgagattcggccttcagcttcttcagtggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttga |
148 |
Q |
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| T |
5268856 |
ttgctagtagaaggttgagattcaagtttctgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaa |
5268955 |
T |
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| Q |
149 |
catcaccaagccacttcttcacgt |
172 |
Q |
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| T |
5268956 |
gatcatcaagccacttcttcacgt |
5268979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 4388141 - 4388050
Alignment:
| Q |
80 |
gcttcttcagtggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcacg |
171 |
Q |
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| T |
4388141 |
gcttcttcaatggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcattatgtttaagatcatcaagccacttcttcacg |
4388050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 172
Target Start/End: Original strand, 5299531 - 5299654
Alignment:
| Q |
49 |
ttgctagtagaaggttgagattcggccttcagcttcttcagtggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttga |
148 |
Q |
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| T |
5299531 |
ttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaa |
5299630 |
T |
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| Q |
149 |
catcaccaagccacttcttcacgt |
172 |
Q |
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| T |
5299631 |
gatcaccaagccacttcttcacgt |
5299654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 5281481 - 5281572
Alignment:
| Q |
76 |
ttcagcttcttcagtggtgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttctt |
167 |
Q |
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| T |
5281481 |
ttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctt |
5281572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 6553620 - 6553543
Alignment:
| Q |
93 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
170 |
Q |
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| T |
6553620 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcac |
6553543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 8455501 - 8455578
Alignment:
| Q |
93 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
170 |
Q |
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| T |
8455501 |
tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcac |
8455578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 6659 - 6582
Alignment:
| Q |
93 |
tgcatcagttgcaatctcatctaatagctggccagcctcatacatagcatgtttgacatcaccaagccacttcttcac |
170 |
Q |
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| T |
6659 |
tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcac |
6582 |
T |
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